| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,174,571 – 1,174,672 |
| Length | 101 |
| Max. P | 0.826118 |
| Location | 1,174,571 – 1,174,672 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 62.66 |
| Shannon entropy | 0.68623 |
| G+C content | 0.40930 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -8.76 |
| Energy contribution | -8.68 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1174571 101 + 24543557 ---GGCGAAACGAGAACUUUUCCUGGGAGCAGUUCAAA-GCUGAAAGAGAGGAAAA-CUCACAUGAUUGUGCGAACGGGAUUGACAUAUGUAACAUACAAUAUAUG ---.................(((((...(((.((((..-..))))...(((.....-))).........)))...)))))....(((((((........))))))) ( -18.50, z-score = -0.36, R) >droSim1.chr3L 793299 81 + 22553184 ---GGCGUAACGGGAACUUUUCCUGGGAGCAGUUCAAA-ACUGAAAGAGAGGAAAA-CUCA-------------------UUGACAUAUGGAACAUACA-UAUAUG ---.((....(((((.....)))))...)).((((...-..((..((.(((.....-))).-------------------))..))....)))).....-...... ( -15.20, z-score = -1.08, R) >droYak2.chr3L 1137540 100 + 24197627 ---UGCGUAACGAGAACUUUUCCUGGGAGCAGUUCAGA-GCUGGAAGAGAGGAAAAUCUCACAUGAUUCUGGGAAAGGCAUUGACGCAUUGA-CAUAUG-UAUAUG ---(((((..(((...(((((((..(((.((((.....-))))...((((......))))......)))..)))))))..))))))))....-......-...... ( -28.60, z-score = -2.19, R) >droEre2.scaffold_4784 1165556 80 + 25762168 ---GGCUUAACGAGAACUUUUCCUGGGAGCAGUUCAGA-GCUGGAAAAGAGGGAAAACUCACAUGAUUCUGGGAAAGCCAUCAA---------------------- ---(((((..(.(((((((((((....(((........-)))))))))).(((....)))......)))).)..))))).....---------------------- ( -23.80, z-score = -1.55, R) >droAna3.scaffold_13337 16548738 106 - 23293914 GGCCUUGUUUCCAGAUCUUUUCCUGGGAACAGUUCAAAAGCUGCAAUCGAAAGAAAUUACAAAUGAUUUUCACAAAAAGCUAAAUAAACUUGAGUAAUAUUAAAUG (..((.((((((((........))))))))))..)...((((....((....)).........((.....)).....))))......................... ( -18.40, z-score = -0.83, R) >consensus ___GGCGUAACGAGAACUUUUCCUGGGAGCAGUUCAAA_GCUGAAAGAGAGGAAAA_CUCACAUGAUUCUGGGAAAGGCAUUGACAUAUGGAACAUACA_UAUAUG .............(((((.(((....))).))))).............(((......))).............................................. ( -8.76 = -8.68 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:05 2011