| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,119,858 – 1,119,927 |
| Length | 69 |
| Max. P | 0.958156 |
| Location | 1,119,858 – 1,119,927 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 84.33 |
| Shannon entropy | 0.30322 |
| G+C content | 0.47324 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -13.46 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1119858 69 + 24543557 ACA-GCGACAGCCGACAACUUUGUCCGUUGUUGAUUGUUGAUUGUAGCUUUGCUUUCAAAGAGUGCCGCC (((-((((((..(((((((.......)))))))..))))).)))).((..(((((.....)))))..)). ( -19.20, z-score = -1.82, R) >droSim1.chr3L 747971 55 + 22553184 ACA-GCGACAGCCGACAACUUUGUCCGUUGUUGAUUGUUGAUUGUAGCUUUGCCUU-------------- (((-((((((..(((((((.......)))))))..))))).))))...........-------------- ( -16.00, z-score = -2.80, R) >droSec1.super_2 1122238 69 + 7591821 ACA-GCGACAGUCGACAACUUUGUCCGUUGUUGAUUGUUGAUUGUAGCUUUGCUUUCAAAGAGUGCCGCC (((-(((((((((((((((.......)))))))))))))).)))).((..(((((.....)))))..)). ( -24.00, z-score = -3.50, R) >droYak2.chr3L 1090789 69 + 24197627 ACU-GCGACAGCCGACAACUUUGUCCGUUGUUGAUUGUUGAUUGUAGCUUUGCCUUCAAAGAGCGCCGCC ((.-.(((((..(((((((.......)))))))..)))))...)).(((((........)))))...... ( -19.20, z-score = -1.84, R) >droEre2.scaffold_4784 1120602 69 + 25762168 ACA-GCGACAGCGGACAACUUUGUCCGUUGUUGAUUGUUGGUUGUAGCUUUUGCUUCAAAGAGUGCCGCC (((-(((((((((((((....)))))))))))).)))).(((.(((.(((((......)))))))).))) ( -27.90, z-score = -3.86, R) >droAna3.scaffold_13337 16500315 70 - 23293914 ACAUACGACAGCCAACAGCCUUGUCUGUUGUUGAUUGUUGAUUGUAGCUCUAGUUUCAAAGACUGCCGAC .....(((((..(((((((.......)))))))..)))))...((((.(((........))))))).... ( -17.70, z-score = -1.44, R) >consensus ACA_GCGACAGCCGACAACUUUGUCCGUUGUUGAUUGUUGAUUGUAGCUUUGCCUUCAAAGAGUGCCGCC .....((((((.(((((((.......))))))).))))))......(((((........)))))...... (-13.46 = -14.13 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:03 2011