| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,094,688 – 1,094,789 |
| Length | 101 |
| Max. P | 0.516031 |
| Location | 1,094,688 – 1,094,789 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.07 |
| Shannon entropy | 0.47070 |
| G+C content | 0.41361 |
| Mean single sequence MFE | -24.59 |
| Consensus MFE | -12.33 |
| Energy contribution | -13.41 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1094688 101 + 24543557 ---AGCGCAGUCUGGGUCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUAUAGGGUUACAAAUAAAUGUGGGCAGACCUCUGCGAGGCUCGCUGUGUGCGCU------- ---((((((....(((((((.((((((..((((.(.((((((.....)))))).).))))........)))))))))))))..(((.....)))....))))))------- ( -31.60, z-score = -2.22, R) >droSim1.chr3L 721484 93 + 22553184 ---AGCGCAGUCUGGGUCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGACCUCAGCGAGGCUCGCUG--------------- ---((((.((((((((((((.((((((..((((.(..(((((.....)))))..).))))........))))))))))))).....))))))))).--------------- ( -27.60, z-score = -2.79, R) >droSec1.super_2 1097620 93 + 7591821 ---AGCGCAGUCUGGGUCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGACCUCUGCGAGGCUCGCUG--------------- ---((((.((((((((((((.((((((..((((.(..(((((.....)))))..).))))........))))))))))))).....))))))))).--------------- ( -27.60, z-score = -2.71, R) >droYak2.chr3L 1065053 108 + 24197627 ---AGCGCAGUCUGGGCCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGACCUCUGCGAGGCUCACUCUAUAAUGUGUGUGUG ---..(((((...((..(((.((((((..((((.(..(((((.....)))))..).))))........))))))))).)).)))))..((.(((.(......).))).)). ( -25.00, z-score = 0.05, R) >droEre2.scaffold_4784 1095545 101 + 25762168 ---AGCGCAGUCUGGGCCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGACCUCUGCGAGGCUCGCUGUGUGCGCG------- ---.(((((((..((((((..........((((.(..(((((.....)))))..).)))).............((((....)))).))))))))))))).....------- ( -27.50, z-score = -0.44, R) >droAna3.scaffold_13337 16471590 99 - 23293914 GGGGCCGGAGUCUGGGCCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGGCCUCUUU----CUCUGUUUGUAAAG-------- .....(((((...(((((((.((((((..((((.(..(((((.....)))))..).))))........)))))))))))))....----))))).........-------- ( -26.00, z-score = -1.25, R) >droGri2.scaffold_15110 1664024 86 + 24565398 --AGGCUGCGUUGGAGGCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAAAGUUACAAAUAAAUGCCUGCUUGUGUCUCU----CUC------------------- --((((((((((((..(........)..)))))))).(((((.....))))).................))))............----...------------------- ( -14.20, z-score = 0.05, R) >droWil1.scaffold_180698 4723891 101 + 11422946 -GGGACAGACUGCGACUCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAAAGUUACAAAUAAAUGUAGCUGUGUCUCUCU----CUCUCUCUUCCUCUUUC----- -((((.(((..(.(((.(...................(((((.....)))))...(((((((......)))))))).))).)..)----)).))))..........----- ( -17.20, z-score = -2.16, R) >consensus ___AGCGCAGUCUGGGUCUGACUUACAACUAAUGCAAUAUAAUAAAUUUAUACAGGGUUACAAAUAAAUGUGGGCAGACCUCUGCGAGGCUCGCUGU_U____________ ......((((...(((((((.((((((..((((.(..(((((.....)))))..).))))........))))))))))))))))).......................... (-12.33 = -13.41 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:02 2011