| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,092,405 – 1,092,501 |
| Length | 96 |
| Max. P | 0.846713 |
| Location | 1,092,405 – 1,092,501 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.67 |
| Shannon entropy | 0.15055 |
| G+C content | 0.33343 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -15.26 |
| Energy contribution | -15.95 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1092405 96 - 24543557 -AACAAAAAAUAAAGAAAAAUGACGUGGAGAAAAGUCAAUUAGGCUGCGCUAAAUGUUAAAAUCGAACAAGACGCAGUAUAUUAUGGUUAACCGCCG -.......................((((..((..((.(((...((((((((...((((.......)))))).))))))..)))))..))..)))).. ( -16.50, z-score = -1.02, R) >droSim1.chr3L 719251 96 - 22553184 -AACAAAAAAUAAAGAAAAAUGACUUGGAGAAAAGUCAAUUAGGCUGCGCUAAAUGUUAAAAUCGAACAAGACGCAGUAUAUUAUGGUUUACUGCCG -...................((((((......)))))).....((((((((...((((.......)))))).)))))).......(((.....))). ( -19.50, z-score = -2.22, R) >droSec1.super_2 1095339 97 - 7591821 AAACAAAAAAUAAAGAAAAAUGACUUGGAGAAAAGUCAAUUAGGCUGCGCUAAAUGUUAAAAUCGAACAAGACGCAGUAUAUUAUGGUUUAUUACCG ....................((((((......)))))).....((((((((...((((.......)))))).)))))).......(((.....))). ( -19.20, z-score = -2.68, R) >droYak2.chr3L 1062699 92 - 24197627 -----AAAAGAAAAGAAAAAUGAGUAGAAGGAAAGUCAAUUAGACUGCGCUAAAUGUUAAAAUCGAACAAGACGCAGUAUAUUAUGGAUUACUGCCG -----........................((..((((......((((((((...((((.......)))))).))))))........))))....)). ( -14.24, z-score = -1.15, R) >consensus _AACAAAAAAUAAAGAAAAAUGACUUGGAGAAAAGUCAAUUAGGCUGCGCUAAAUGUUAAAAUCGAACAAGACGCAGUAUAUUAUGGUUUACUGCCG ....................((((((......)))))).....((((((((...((((.......)))))).)))))).......(((.....))). (-15.26 = -15.95 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:02 2011