| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,084,605 – 1,084,679 |
| Length | 74 |
| Max. P | 0.546839 |
| Location | 1,084,605 – 1,084,679 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 88.29 |
| Shannon entropy | 0.19403 |
| G+C content | 0.48825 |
| Mean single sequence MFE | -17.00 |
| Consensus MFE | -13.34 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1084605 74 - 24543557 GACCCGCCGAUGAACCCGAGAUGCAUUCGCAUUCUGGGGCACUUACUGCACACUCAGAGAAAUGCAACUAUAUU .....(((..(((.((((..((((....))))..))))(((.....)))....)))..)....))......... ( -16.60, z-score = -1.36, R) >droSim1.chr3L 711687 74 - 22553184 GACCCGCCGAUGAACCCGAGAUGCAUUCGCAUUCUGGGGCACUUACUGCACACUCAGAGAAAUGCAAUUAUAAU .....(((..(((.((((..((((....))))..))))(((.....)))....)))..)....))......... ( -16.60, z-score = -1.24, R) >droSec1.super_2 1087823 74 - 7591821 GACCCACCGAUGAACCCGAGAUGCAUUCGCAUUCUGGGACACUUACUGCACACUCAGAGAAAUGCAAUUUUAAU ..............((((..((((....))))..))))........((((............))))........ ( -13.70, z-score = -1.63, R) >droEre2.scaffold_4784 1081821 71 - 25762168 GACCCGCCGAUGAACCCGAGAUGCAUUCGCAUUCUGGGGCACUUACUGCACAGAUAGAGAAAAUUUGUGCU--- ..............((((..((((....))))..)))).........((((((((.......)))))))).--- ( -21.10, z-score = -2.45, R) >consensus GACCCGCCGAUGAACCCGAGAUGCAUUCGCAUUCUGGGGCACUUACUGCACACUCAGAGAAAUGCAAUUAUAAU .......(..(((.((((..((((....))))..))))(((.....)))....)))..)............... (-13.34 = -13.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:01 2011