| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,090,322 – 4,090,392 |
| Length | 70 |
| Max. P | 0.624343 |
| Location | 4,090,322 – 4,090,392 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 63.49 |
| Shannon entropy | 0.66055 |
| G+C content | 0.42481 |
| Mean single sequence MFE | -12.42 |
| Consensus MFE | -6.27 |
| Energy contribution | -6.07 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4090322 70 - 23011544 --CGUAUGAUGGAAAAGUUUCCGUCUGGCAGGAAGUUUAGUUUGGGUCUGCAGAUCCGAGAUACAAGAGGUU --.(((((((((((....)))))))...............((((((((....))))))))))))........ ( -18.80, z-score = -1.74, R) >droSim1.chr2L 4045459 70 - 22036055 --CGUGUGAUGGAAAAGUUUCCGUCUGGCAGGAAGUUUAGUUUGGGUCUGCAGAUCUCAGAUACAAGAGGUU --.....(((((((....)))))))..(((((.((......))...))))).((((((........)))))) ( -17.30, z-score = -1.02, R) >droSec1.super_5 2189443 56 - 5866729 --CGUGUGAUGGAAAAGUUUCCGUCUGGCAGGAAGUUUAGUUUGGGUCUGCAGAGGUU-------------- --.....(((((((....)))))))..(((((.((......))...))))).......-------------- ( -12.90, z-score = -1.22, R) >droYak2.chr2L 4107479 70 - 22324452 --CGUAUGAUGGAAAACUUUUCGUCUGGCAGGAAGUUUAGUUAGGGUCUGCAGAUAUGAGAUACAAGAGGUU --.(((((((((((....)))))))..(((((..............))))).........))))........ ( -11.64, z-score = 0.26, R) >droEre2.scaffold_4929 4148312 70 - 26641161 --CGUUUGAUGGAAAAGUUUCCGUCUGGUAGGAAGUUUAGUUUGGGUCUGCAGAUCUGAGAUACAAGAGGUU --.....(((((((....))))))).........((....((..((((....))))..))..))........ ( -14.70, z-score = -0.52, R) >dp4.chr4_group3 9840772 64 + 11692001 AAGGUAGGGCAAAAGUUUUUUAGUAGAGAAAUGCAGCAGAUUCAGAGAUGCAGAUACAAGAUAC-------- ...(((..(((....(((((....)))))..))).(((..........)))...))).......-------- ( -6.10, z-score = -0.16, R) >droPer1.super_1 6960514 64 + 10282868 AAGAUAGGGCAAAAGUUUUUUAGUAGAGAAAUGCAGCAGAUUCAGAGAUGCAGAUACAAGAUAC-------- ..((....((....(((((((....)))))))...))....)).....................-------- ( -5.50, z-score = -0.11, R) >consensus __CGUAUGAUGGAAAAGUUUCCGUCUGGCAGGAAGUUUAGUUUGGGUCUGCAGAUAUGAGAUACAAGAGGUU .......(((((((....)))))))..(((((..............)))))..................... ( -6.27 = -6.07 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:21 2011