| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,074,607 – 1,074,709 |
| Length | 102 |
| Max. P | 0.592820 |
| Location | 1,074,607 – 1,074,709 |
|---|---|
| Length | 102 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.55 |
| Shannon entropy | 0.28171 |
| G+C content | 0.37709 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.60 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1074607 102 - 24543557 ------------AAUGACUUCGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACCCC--- ------------...............(((((((((.(((.......((.((((......)))).)).......))).)))).)))))..........................--- ( -18.64, z-score = -2.27, R) >droSim1.chr3L 701281 102 - 22553184 ------------AAUGACUUUGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACCCC--- ------------...............(((((((((.(((.......((.((((......)))).)).......))).)))).)))))..........................--- ( -18.64, z-score = -2.10, R) >droSec1.super_2 1077880 102 - 7591821 ------------AAUGACUUUGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACCCC--- ------------...............(((((((((.(((.......((.((((......)))).)).......))).)))).)))))..........................--- ( -18.64, z-score = -2.10, R) >droYak2.chr3L 1044629 100 - 24197627 ------------AAUGACUUUGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACC----- ------------...............(((((((((.(((.......((.((((......)))).)).......))).)))).)))))........................----- ( -18.64, z-score = -2.25, R) >droEre2.scaffold_4784 1071912 100 - 25762168 ------------AAUGACUUUGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACC----- ------------...............(((((((((.(((.......((.((((......)))).)).......))).)))).)))))........................----- ( -18.64, z-score = -2.25, R) >droAna3.scaffold_13337 16450913 102 + 23293914 ------------AAUGACUUUGCCUAUAGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGUCCUAAUUACAACAAACAAUUACACACC--- ------------...((((..((..(((((((((((........))))).((((......))))....)))....)))..))..))))..........................--- ( -15.10, z-score = -1.28, R) >droWil1.scaffold_180698 4691954 114 - 11422946 AAUGACUUUGUCUUUGGCUUUGCCUAUGGCUGGCAAUUAACCAUUUGCCUUUGAAACAAAUCAACGGAAGCGCUUUAUUUGCUCAGCCUUAAUUACAACUAAACAAAAUACAUA--- .(((..(((((....(((...)))...(((((((((.(((.......((.((((......)))).)).......))).)))).)))))..............)))))...))).--- ( -23.34, z-score = -1.68, R) >droVir3.scaffold_13049 343342 111 - 25233164 -----AAAUGAGUUUGGCGUUGCCCAUGGCUAGCAAUUAACUAUUUG-CGUUGAAAGAAAUCAACGGAAGCCGUUUAUUUGCUCAGCCUUAAUUACAACAAACAAUUACAGCCCAAA -----......(((((..((.......(((((((((..(((..(((.-((((((......)))))).)))..)))...))))).))))......))..))))).............. ( -28.72, z-score = -2.34, R) >droMoj3.scaffold_6680 23922763 110 + 24764193 ------AAUGACUUUGGCGUUGCCUAUGGCUAGCAAUUAACUAUUUG-CGUUGAAAGAAAUCAACGGAAGCCGUUUAUUUGCUCAGCCUUAAUUACAUCAAACAAUUACAGCCCCAA ------.......((((.((((.....(((((((((..(((..(((.-((((((......)))))).)))..)))...))))).)))).(((((.........))))))))).)))) ( -27.70, z-score = -2.24, R) >droGri2.scaffold_15110 1638461 107 - 24565398 ------AAUGAGUUUGGCGUUGCCUAUGGCUAGCAAUUAACUAUUUG-CGUUGAAAGAAAUCAACGGAAGCACUUUAUUUGCUCAGCCUUAAUUACAACAAACAAUUACAGCCG--- ------.....(((((..((.......(((((((((.(((...(((.-((((((......)))))).)))....))).))))).))))......))..)))))...........--- ( -26.62, z-score = -2.06, R) >consensus ____________AAUGACUUUGCCUAUGGCUGGCAAUUAACUAUUUGCCUUUGAAACAAAUCAACGGAAGCACUUUAUUUGCUCAGCCCUAAUUACAACAAACAAUUACACCCC___ ...........................(((((((((.(((..........((((......))))(....)....))).))))).))))............................. (-12.80 = -12.60 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:00 2011