| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,060,257 – 1,060,350 |
| Length | 93 |
| Max. P | 0.823907 |
| Location | 1,060,257 – 1,060,350 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.28 |
| Shannon entropy | 0.43550 |
| G+C content | 0.44810 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -12.70 |
| Energy contribution | -16.32 |
| Covariance contribution | 3.63 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1060257 93 + 24543557 -----------CCCAGCUUCCAAAACGUAAUCAUAAUCAUCCUCAUCGUCAUCAUCUUUCGGUGAUUAUCGUCAUUAUCCAGGGCCCUGGCAAUGAUUAUGGUG -----------..................(((((((((((......((..((((((....))))))...)).......((((....))))..))))))))))). ( -21.20, z-score = -2.03, R) >droAna3.scaffold_13337 16436083 102 - 23293914 CACAGGACGAAGGGGGCACCAAA--CAGAAUCAUAAUCAUUCUCAUCGUCAUCAUCUUUCGGUGAUUAUCGUCAUUAUCCGAGGCCCCAGCGAUGAUUAUGGUG (((..(((((.((.....))...--.(((((.......)))))..)))))((((((.(((((((((....))))....)))))((....))))))))....))) ( -23.00, z-score = 0.22, R) >dp4.Unknown_singleton_3043 4362 84 + 9747 ---------------GCUCCUCC--CCCAAACAGAAUCAUAAUCAUCGUCAUCUUCU---AACGAUUAUCGUCAUUAUCCUUGGAGCGAGCGAUGAUUAUCGUG ---------------........--..........((.(((((((((((..((((((---((.(((..........))).)))))).))))))))))))).)). ( -18.10, z-score = -2.07, R) >droPer1.super_1031 4711 84 - 8453 ---------------GCUCCUCC--CCCAAACAGAAUCAUAAUCAUCGUCAUCUUCU---AACGAUUAUCGUCAUUAUCCUUGGAGCGAGCGAUGAUUAUCGUG ---------------........--..........((.(((((((((((..((((((---((.(((..........))).)))))).))))))))))))).)). ( -18.10, z-score = -2.07, R) >consensus _______________GCUCCUAA__CCCAAACAGAAUCAUAAUCAUCGUCAUCAUCU___AACGAUUAUCGUCAUUAUCCUUGGACCGAGCGAUGAUUAUCGUG ...................................((((((((((((((...((((((..((((((....))))))....))))))...)))))))))))))). (-12.70 = -16.32 + 3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:57 2011