| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,016,227 – 1,016,363 |
| Length | 136 |
| Max. P | 0.626427 |
| Location | 1,016,227 – 1,016,363 |
|---|---|
| Length | 136 |
| Sequences | 6 |
| Columns | 140 |
| Reading direction | reverse |
| Mean pairwise identity | 70.60 |
| Shannon entropy | 0.56350 |
| G+C content | 0.42393 |
| Mean single sequence MFE | -33.92 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1016227 136 - 24543557 UGUUCCUGAGCCCUUGUCGUUGGCUCCUCAAUGGCAAGACUGAUAUGCAAAUUGCGAUGGAAAUCCAGUGAAAAAAAGUAGAAAUCCUAAGAAGAAACAGCACACAAAGCAUUA-GAAG---CUGCUGCUGGAAAGCAGA .(((.((((((.(((((((((((....))))))))))).......(((..((((.(((....))))))).........(((.....)))..........)))......)).)))-).))---)..(((((....))))). ( -34.20, z-score = -0.70, R) >droSim1.chr3L 649180 135 - 22553184 UGUUCCUGAGCCCUUGUCGUUGGCUCCUCAAUGGCAAGACUGAUAUGCAAAUUGCGAUGGAAAUCCAGUGAAAA-AAGUAGAAAUGCUAAGAAAAAACAGCACACAAAGCAUUA-GAAG---CUGCUGCUGGAAAGCAGA .(((.((((((.(((((((((((....))))))))))).......(((..((((.(((....))))))).....-.((((....))))...........)))......)).)))-).))---)..(((((....))))). ( -38.00, z-score = -1.74, R) >droSec1.super_2 1027740 131 - 7591821 UGUUCCUGAGCCCUUGUCGUUGGCUCCUCAAUGGCAAGACUGAUAUGCAAAUUGCGAUGGAAAUCCAGUGAAAA-----AGAAAUGUUAAGAAAAAACAGCACACAAAGCAUUA-GAAG---CUGCUGCUGGAAAGCAGA .(((.((((((.(((((((((((....))))))))))).......(((..((((.(((....))))))).....-----.....((((.......)))))))......)).)))-).))---)..(((((....))))). ( -34.80, z-score = -1.19, R) >droYak2.chr3L 992744 138 - 24197627 UGUUCCUGAGUCCUUGUCGUUGGCUCCUCAAUGGCAAGACUGAUAUGCAAAUUGCGAUGGAAAGCCAGGGAAAA-AUGUAUAAAUGCUAGAAAAAAAUGGCAUACAAAGCAUUA-GAAGCUUCUGCUGCUGGAAAGCAGA ..((((((((((.((((((((((....))))))))))))))....(((.....))).........))))))..(-((((....((((((........)))))).....))))).-..........(((((....))))). ( -40.00, z-score = -1.70, R) >droAna3.scaffold_13337 16399160 120 + 23293914 ----UGUGGACUCUUGUCGUUGUUUCCUCAAUGGCAACACUGAUAUGCAAAUUGCGAUGAAAA--CAACAACCA-------GAAUGGCAAAAAGAAAAAAUGCCAGAAACAUUG-AGAA-----GCUGC-AGAAGGCAGA ----........(((.(((.((((((.(((.((....)).)))..(((.....))).......--.........-------...(((((...........))))))))))).))-).))-----)((((-.....)))). ( -26.40, z-score = -0.29, R) >droGri2.scaffold_15110 1572829 125 - 24565398 ------------CUUGCUGCUGCUUUCU--GUGGCAACAAUGAUAUGCAAAUUGCG-CAAAAAGUGAAUGGGAAAACCAAAGCCAAAGAACUCAGGGAUGCAUAAAAAACAACACGCAGAUUGCUUUGCUUGACAGCAGA ------------.(((((((((..((((--.((((..........(((.......)-)).........(((.....)))..)))).))))..))).................((.(((((....))))).)).)))))). ( -30.10, z-score = 0.13, R) >consensus UGUUCCUGAGCCCUUGUCGUUGGCUCCUCAAUGGCAAGACUGAUAUGCAAAUUGCGAUGGAAAUCCAGUGAAAA_A_GUAGAAAUGCUAAGAAAAAACAGCACACAAAGCAUUA_GAAG___CUGCUGCUGGAAAGCAGA ............((((((((((......)))))))))).......(((.....))).....................................................................(((((....))))). (-18.21 = -18.35 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:53 2011