| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,015,653 – 1,015,773 |
| Length | 120 |
| Max. P | 0.624041 |
| Location | 1,015,653 – 1,015,773 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.58 |
| Shannon entropy | 0.18883 |
| G+C content | 0.31500 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -17.40 |
| Energy contribution | -17.04 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1015653 120 + 24543557 UUAAUUACUCUACGUUUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUACCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACG ...............................((..........((((...((((.(((((((((.....)))....))))))..)))).))))....(((((((....)))))))))... ( -17.10, z-score = -1.17, R) >droSim1.chr3L 648608 120 + 22553184 UUAAUUACUCUCAGUUUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUGCACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACG ...............................((..........((((...((((.((((((((((...)))))))....)))..)))).))))....(((((((....)))))))))... ( -19.50, z-score = -1.05, R) >droSec1.super_2 1027180 108 + 7591821 ------------AAAUCCUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGGUCUGCCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACG ------------...................((..........((((...((((.((((((..((....)).....))))))..)))).))))....(((((((....)))))))))... ( -18.10, z-score = -0.85, R) >droYak2.chr3L 992178 120 + 24197627 UUAAUUACUCUCAGUUUUUUGAAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUUUGCCAAUUUAUUACAUUUCUAUUCAAUAUUCAUAGAUUUAUAUCCGUGGCACG ..........((((....)))).........((..........((((...((((.((((((((((...))))....))))))..)))).))))....((..(((....)))..))))... ( -17.00, z-score = -0.43, R) >droEre2.scaffold_4784 1015910 120 + 25762168 UUAAUUAAGCUCAGUUUUUUGCAUCCUUUAAGCUGUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUACACUUUUAUUCAAUAUUCAUAGAUUUAUAUCUGUGGCACG ..(((((((..((((((............))))))..)))))))(((.(..((((.(((((((((...))))....)))))))))..).)))....((((((((....)))))))).... ( -26.10, z-score = -2.71, R) >consensus UUAAUUACUCUCAGUUUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACG ...............................((..........((((...((((.(((((((((.....))))))....)))..)))).))))....(((((((....)))))))))... (-17.40 = -17.04 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:52 2011