| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,014,692 – 1,014,796 |
| Length | 104 |
| Max. P | 0.698955 |
| Location | 1,014,692 – 1,014,796 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.06 |
| Shannon entropy | 0.42470 |
| G+C content | 0.27991 |
| Mean single sequence MFE | -13.86 |
| Consensus MFE | -9.83 |
| Energy contribution | -11.52 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1014692 104 + 24543557 AUAACUUAGUAUCACUUAUUAGACUCCUGUUUAGUAAUUUUGAUGUCUUGCCAAACAUUAAUUUUCCUACUUCACAUAAUUAUUUUAACAGGAGUGUCCUCACU .....((((((.....))))))(((((((((.((((((((((((((........)))))))................)))))))..)))))))))......... ( -19.29, z-score = -2.68, R) >droYak2.chr3L 991164 103 + 24197627 AUUACUUAGCAUCCAUUAGUAGACUCCUGUUUAAUCAUUUUAUUGUCUUGCCUAACAAUA-UUUCACUACUUCAGAUAAUUAUUUAAACGGUUGUGUAGACCUU ...................((.((..((((((((.......(((((((............-............)))))))...))))))))..)).))...... ( -11.06, z-score = 0.53, R) >droSec1.super_2 1026248 84 + 7591821 ----------AUUACUUAGUAGACUCCUGUUUAAUAAUUUUCCUGUCUUACCUAACAUUAAUUUUC-UACUUUAUAUAAAUGUUUUAACAGGAGU--------- ----------............(((((((((......................((((((.((....-........)).))))))..)))))))))--------- ( -11.45, z-score = -0.91, R) >droSim1.chr3L 647657 85 + 22553184 ----------AUUACUUAGUAGACUCCUGUUUAAUAAUUUUCCUGUCUUACCUAACAUUAAUUUUCCUACUUUAGAUAAAUGUUUUAACAGGAGU--------- ----------............(((((((((......................((((((.((((.........)))).))))))..)))))))))--------- ( -13.65, z-score = -1.33, R) >consensus __________AUCACUUAGUAGACUCCUGUUUAAUAAUUUUCCUGUCUUACCUAACAUUAAUUUUCCUACUUCAGAUAAAUAUUUUAACAGGAGU_________ ......................(((((((((.((((((((((((((........)))))))................)))))))..)))))))))......... ( -9.83 = -11.52 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:51 2011