| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,011,311 – 1,011,389 |
| Length | 78 |
| Max. P | 0.500000 |
| Location | 1,011,311 – 1,011,389 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 92.18 |
| Shannon entropy | 0.13822 |
| G+C content | 0.55904 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -24.08 |
| Energy contribution | -23.88 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 1011311 78 + 24543557 CAGCCACGGCACAGUGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUCCUGUGUGCGAGUAUUAGUGGGCAG ...(((((((.(((((((........)))))))..(((....))))))((((......))))........)))).... ( -30.90, z-score = -2.07, R) >droAna3.scaffold_13337 16393839 76 - 23293914 CAGCCAUGGUGC--UGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUUCAGUAUGCGAGUAUUAGUGUGCGA .......(((((--((((.....)))))))))..((((....)))).(((((...(((((....)))))...))))). ( -28.80, z-score = -2.06, R) >droYak2.chr3L 987687 78 + 24197627 CAGCCAUGGCGCUGUGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUCCUGUGCGCGAGUAUUAGUGGGCGG ..(((.....(((((.........)))))(((((((((....)))).(((((......)))))....))))).))).. ( -32.00, z-score = -1.50, R) >droSec1.super_2 1022856 78 + 7591821 CAGCCACGGCACUGUGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUCCUGUGUGCGAGUAUUAGUGGCCAG ..((((((((((.((((((............))))))(....))))))((((......))))........)))))... ( -31.20, z-score = -2.20, R) >droSim1.chr3L 644248 78 + 22553184 CAGCCACGGCACUGUGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUCCUGUGUGCGAGUAUUAGUGGGCAG ..(((......((((.........))))((((((((((....)))).(((((......)))))....))))))))).. ( -28.70, z-score = -1.12, R) >consensus CAGCCACGGCACUGUGUUAAUUAAGCAGCACUGACACGGAAACGUGCCGCGCUCCUGUGUGCGAGUAUUAGUGGGCAG ...(((((((((.((((((............))))))(....))))))((((......))))........)))).... (-24.08 = -23.88 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:50 2011