Locus 577

Sequence ID dm3.chr2L
Location 4,089,334 – 4,089,454
Length 120
Max. P 0.656483
window768

overview

Window 8

Location 4,089,334 – 4,089,454
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Shannon entropy 0.07652
G+C content 0.26389
Mean single sequence MFE -22.63
Consensus MFE -19.09
Energy contribution -19.87
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.93
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.35
SVM RNA-class probability 0.656483
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4089334 120 + 23011544
CAUUAAAGUUUAUAGUUUGGUAAAGACCAUUGAACUUUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUGUUCUACCUUUAAUAUUAUUACUUUA
...(((((((((.(((((((.((((.((((.((((...((((..(((......))).)))).))))))))...)))))))))))..)))))))))......................... ( -24.00, z-score =  -2.29, R)
>droSec1.super_5 2188458 120 + 5866729
CAUUAAAGUUUAUAGUUGGUAAAAGACCAUUGAACUCUUGCGUUCAAAAUGUAUUGUUGCAUGUUUAUGGAAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUUAUUACUUUA
...((((((..(((((.((((..((((..((((((......)))))).(((((....)))))))))((((((((((...........)))))))))).))))......))))).)))))) ( -20.30, z-score =  -1.43, R)
>droSim1.chr2L 4044444 120 + 22036055
CAUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAACAUUUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUUAUUACUUUA
....((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....)))))))).......................... ( -23.60, z-score =  -2.08, R)
>consensus
CAUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUUAUUACUUUA
....((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....)))))))).......................... (-19.09 = -19.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:21 2011