| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,010,891 – 1,010,981 |
| Length | 90 |
| Max. P | 0.965312 |
| Location | 1,010,891 – 1,010,981 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.33 |
| Shannon entropy | 0.52887 |
| G+C content | 0.48509 |
| Mean single sequence MFE | -15.89 |
| Consensus MFE | -11.11 |
| Energy contribution | -12.21 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1010891 90 - 24543557 CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCGCACACCCCCU--------AUUUCCCAUUUUCCAUUUUCAU------ ..((....))...(((.(((((.((((.....))))...(((((....)))))))))).)))......--------......................------ ( -17.40, z-score = -1.65, R) >droAna3.scaffold_13337 16393437 88 + 23293914 CUGCUCUUGCUUCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCCC-CGCCCCCU---------UUUUCUAUACCCAAACGCCCU------ ..((((..(((((.(((....)))))))).)).......(((((....)))))......-.)).....---------.....................------ ( -13.20, z-score = -0.40, R) >droEre2.scaffold_4784 1011236 97 - 25762168 CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCACACUCCCCCU-GCUUCCCAUUUUCCAUUUUCCAUUUUCCU------ .((((..(((((.((..(((...((((.....))))...)))..)).)))))..))))..........-.............................------ ( -16.10, z-score = -1.35, R) >droYak2.chr3L 987295 98 - 24197627 CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCACACUCCCCCUCUCCCCCUAUUUGCCAUUUCCCAUUUUCCU------ .((((..(((((.((..(((...((((.....))))...)))..)).)))))..))))........................................------ ( -16.10, z-score = -1.76, R) >droSec1.super_2 1022433 103 - 7591821 CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCACACUCCCCCU-AUUUCCCAUUUCCCAUUUUCCAUUUCCAUUUUCCU .((((..(((((.((..(((...((((.....))))...)))..)).)))))..))))..........-................................... ( -16.10, z-score = -2.02, R) >droSim1.chr3L 643844 103 - 22553184 CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCACACUCCCCCU-AUUUCCCAUUUCCCAUUUUCCAUUUCCAUUUUCCU .((((..(((((.((..(((...((((.....))))...)))..)).)))))..))))..........-................................... ( -16.10, z-score = -2.02, R) >droVir3.scaffold_13049 4362679 79 + 25233164 CUGCCCCUGCCCCUGCAGCCUGAUGUAAAUGAUUGAGUUUCGAGUUUGAUGCCUGGCAUCAAUUGCAU----GCAAAUUUUGU--------------------- .(((..((((....))))....((((((....(((.....)))..(((((((...)))))))))))))----)))........--------------------- ( -16.20, z-score = -0.17, R) >consensus CUGCUCUUGCUCCUGUCCGCUGAUGAAGUUGAUUUAAUUGCGCUUAUGAGCGCCAGCACACUCCCCCU____UCCCAUUUCCCAUUUUCCAUUUCCAU______ .((((..(((((.((..(((...((((.....))))...)))..)).)))))..)))).............................................. (-11.11 = -12.21 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:49 2011