| Sequence ID | dm3.chr3L |
|---|---|
| Location | 967,259 – 967,347 |
| Length | 88 |
| Max. P | 0.571372 |
| Location | 967,259 – 967,347 |
|---|---|
| Length | 88 |
| Sequences | 12 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.51 |
| Shannon entropy | 0.35819 |
| G+C content | 0.38199 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.13 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571372 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 967259 88 - 24543557 --------------UUGCCUUUCUGGCA--AAUGAUAAAAACUGUCGACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGUCG-UUUGCCG --------------..........((((--((((((((((.(((((...((...))..))...(((((((.....))).))))...)))))))))))-)))))). ( -21.80, z-score = -2.76, R) >droSim1.chr3L 599162 88 - 22553184 --------------UUGCCUUCCUGGCA--AAUGAUAAAAACUGGCGACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGUCG-UUUGCCG --------------..........((((--((((((((((.((((((......))))))....(((((((.....))).))))......))))))))-)))))). ( -27.80, z-score = -4.35, R) >droSec1.super_2 978933 88 - 7591821 --------------UUGCCUUCCUGGCA--AAUGAUAAAAACUGGCGACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAGUCAGUUUUGUCG-UUUGCCG --------------..........((((--((((((((((.(((((...((...)).......(((((((.....))).)))).)))))))))))))-)))))). ( -28.30, z-score = -3.87, R) >droYak2.chr3L 942668 88 - 24197627 --------------UUGCCUUCCUGGCA--AAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGUCG-UUUGCCG --------------..........((((--((((((((((.((((((......))))))....(((((((.....))).))))......))))))))-)))))). ( -28.50, z-score = -4.74, R) >droEre2.scaffold_4784 968284 88 - 25762168 --------------UUGCCUUCCUGGCA--AAUGAUAAAAACCGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGUCC-UUUGCCG --------------(((((.....))))--)...........((((((.(((..(((((....(((((((.....))).))))..)))))..)))..-.)))))) ( -21.80, z-score = -2.70, R) >droAna3.scaffold_13337 16342678 102 + 23293914 UCGUCCUCUCUCCUUGCGGCAGCUGGCA--AAUGAUAAAAACUGGCGACGCACUGCUAAAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCG-UUUCCAG ..(((......((..((....)).))..--...))).....((((.((((((..(((((....(((((((.....))).))))..)))))..)).))-)).)))) ( -20.60, z-score = -0.21, R) >dp4.chrXR_group6 6581738 88 - 13314419 ---------------CUCCCUUCUAGCAGCAGUUGUGGCAAAUGAUAGAA-ACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUUCCG-UUUGCCG ---------------........((((....)))).((((((((...(((-(..(((((....(((((((.....))).))))..))))).))))))-)))))). ( -17.60, z-score = -1.15, R) >droPer1.super_82 240139 89 + 267963 ---------------CUCCCUUCUAGCAGCAGUUGUGGCAAAUGAUAGAA-ACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUUCCGCUUUGCCG ---------------.....(((((((((...((((........))))..-.)))))))))..(((((((.....))).))))...................... ( -15.90, z-score = -0.17, R) >droWil1.scaffold_180698 5695507 97 - 11422946 -----UUGCCUUUCUCUGGCAGUUGGCA--AAUGAUAAAAACAGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCG-UUUGCCG -----(((((.......)))))..((((--((((.........(....)(((..(((((....(((((((.....))).))))..)))))..)))))-)))))). ( -27.80, z-score = -2.35, R) >droVir3.scaffold_13049 15526053 86 - 25233164 ----------------UCGCACUUGGCA--AAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCG-UUUGUCG ----------------..(((..(((((--((...(((...((((((......))))))....(((((((.....))).))))..)))..)))))))-..))).. ( -21.40, z-score = -1.95, R) >droMoj3.scaffold_6680 3439239 86 + 24764193 ----------------UCGCACUUGGCA--AAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCG-UUUGUCG ----------------..(((..(((((--((...(((...((((((......))))))....(((((((.....))).))))..)))..)))))))-..))).. ( -21.40, z-score = -1.95, R) >droGri2.scaffold_15110 17291475 86 - 24565398 ----------------UUGCACUUGGCA--AAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCAG-UUUGUCG ----------------........((((--(((........((((((......))))))......((((...(((((.......)))))...)))))-)))))). ( -19.90, z-score = -1.07, R) >consensus ______________UUUCCCUCCUGGCA__AAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCG_UUUGCCG ...........................................(((((.(((..(((((....(((((((.....))).))))..)))))..)))....))))). (-10.15 = -10.13 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:46 2011