| Sequence ID | dm3.chr3L |
|---|---|
| Location | 945,241 – 945,336 |
| Length | 95 |
| Max. P | 0.736694 |
| Location | 945,241 – 945,336 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.33 |
| Shannon entropy | 0.39181 |
| G+C content | 0.56519 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -19.79 |
| Energy contribution | -19.77 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 945241 95 - 24543557 UCGCCACUCAUGCGACA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGUAUG ..(((.(..((((((..--------((...(((((((..(((...(((((((...))))))))))..)))))))...))))))))..).)))........... ( -34.10, z-score = -2.00, R) >droAna3.scaffold_13337 16319227 86 + 23293914 ------------UGCCAUGC----AUUUGCUAUGCGUCCUGGCCAAGGACACGUACUGUCCUCCGUCACGCAUAUGUGUUCCCAUUUGAAGGUA-UAGGUAGA ------------((((((((----....(((((((((..(((...((((((.....)))))))))..))))))).)).(((......))).)))-).)))).. ( -25.20, z-score = -0.91, R) >droEre2.scaffold_4784 946668 79 - 25762168 ------------------------AGUUGCCAUGCGUCCUGGCCAAGGACACUCCGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGCAUG ------------------------(((.(((((((((..(((...(((((((...))))))))))..))))))((((....))))....))).)))....... ( -27.00, z-score = -1.33, R) >droYak2.chr3L 918169 103 - 24197627 UCGCCACUCAUGCGCCAGUUCCUGCGUUGCCAUGCGUCCUGGCCAAGGACACUCGUUGUCCUCCGUCACGCAUAUGUGCUUGCACUUGGAGCUGCUCUGUAUG ........((((((.(((((((((((..(((((((((..(((...((((((.....)))))))))..)))))..)).)).))))...)))))))...)))))) ( -35.50, z-score = -1.69, R) >droSec1.super_2 955917 95 - 7591821 UCGCCACUCAUGCGCCA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCAGGUCUGUAUG ..(((.(..(((((..(--------((...(((((((..(((...(((((((...))))))))))..)))))))...))))))))..).)))........... ( -34.30, z-score = -1.72, R) >droSim1.chr3L 577245 95 - 22553184 UCGCCACUCAUGCGCCA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCAGCUCUGUAUG ..(((.(..(((((..(--------((...(((((((..(((...(((((((...))))))))))..)))))))...))))))))..).)))........... ( -34.30, z-score = -2.03, R) >consensus UCGCCACUCAUGCGCCA________GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGUAUG ............................(((((((((..(((...((((((.....)))))))))..))))))..(((....)))....)))........... (-19.79 = -19.77 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:42 2011