| Sequence ID | dm3.chr3L |
|---|---|
| Location | 942,238 – 942,342 |
| Length | 104 |
| Max. P | 0.671619 |
| Location | 942,238 – 942,342 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.24 |
| Shannon entropy | 0.33165 |
| G+C content | 0.47361 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.44 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 942238 104 + 24543557 ACUUCAACUGCGCUGCACUUAAUGGAGCAGCAGAUGAUGAAGACGGAUUACCCCUUUUUUGCGAUGCAACCGACUGGUUUGUGUGCGUCUUUUUAUCGGGCUGC .........(((((((.((....)).))))).(((((.((((((((......))......((.((((((((....)).)))))))))))))))))))..))... ( -30.50, z-score = -1.29, R) >droEre2.scaffold_4784 943858 102 + 25762168 ACUUUAACUGAGCUGCACUUAAUGGGGCAGCUGAUGACGAAGACGGAUUACCACUUUUUUGCGAUGCAACUGACAGGUUUAUG--CGUCUCUUUAUCGGUCUCC ......(((.((((((.((....)).))))))(((((.((.((((.((.(((..((..((((...))))..))..)))..)).--)))))).)))))))).... ( -27.80, z-score = -1.96, R) >droYak2.chr3L 915206 103 + 24197627 ACUUUAACUGCGCUGCACUUAAUGGAGCAGCUGAUGAUGAAGACGGAUUACCACUUUUU-GCCACGCAACUGACUGGUUUAUGUGCGUCUUUUUAUCGGGCGGC .......(((((((((.((....)).)))))((((((.(((((((.((.((((.((.((-((...))))..)).))))....)).))))))))))))).)))). ( -34.20, z-score = -3.53, R) >droSec1.super_2 952917 85 + 7591821 ACUUCAACUGCGCUGCACUUAAUGGAGCAGCUGAUGAUGAAGACGGAUUACCCCAUUUUUGAGAUGAC-------------------UCUUUUUAUCGGGCUGC .........(((((((.((....)).)))))...(((((((((.((......))......(((....)-------------------))))))))))).))... ( -19.80, z-score = -1.16, R) >droSim1.chr3L 574258 85 + 22553184 ACUUCAGCUGCGCUGCACUUAAUGGAGCAGCUGAUGAUGAAGACGGAUUACCCCUUUUUUGCGAUGUC-------------------UCUUUUUAUCGGGCUGC ....(((((..(((((.((....)).)))))...(((((((((.((((...(.(......).)..)))-------------------).)))))))))))))). ( -24.20, z-score = -1.41, R) >consensus ACUUCAACUGCGCUGCACUUAAUGGAGCAGCUGAUGAUGAAGACGGAUUACCCCUUUUUUGCGAUGCAAC_GAC_GGUUU_UG__CGUCUUUUUAUCGGGCUGC .........(((((((.((....)).))))).(((((.((((((((....))...............((((....)))).......)))))))))))..))... (-16.54 = -17.44 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:41 2011