| Sequence ID | dm3.chr3L |
|---|---|
| Location | 937,203 – 937,319 |
| Length | 116 |
| Max. P | 0.826531 |
| Location | 937,203 – 937,319 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Shannon entropy | 0.31155 |
| G+C content | 0.46327 |
| Mean single sequence MFE | -37.80 |
| Consensus MFE | -23.34 |
| Energy contribution | -23.46 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 937203 116 - 24543557 ---ACAUAUGACAUAUAUUUUUUCUGUGUUGCUUAGGAAAAUUUGUGUGCCUGAUGUCCUUUGAGGCAUCCAAGUGCGAGCUGUCAAAAACAGCUCUUUCAGUUGUGAAGAAGGGAGAG ---...............(((..((...(..(....(((((((((..(((((.(.......).)))))..)))))..(((((((.....)))))))))))....)..)...))..))). ( -33.10, z-score = -1.70, R) >droSim1.chr3L 570264 112 - 22553184 ---ACAGAUGACUUAUAUUUUUUCUGUGUGGCUUAGGAAAG--UGUGUGCCUAAUCUCCCUUGAGGCAUAUGAGUGGGAGCUGUCAAAGACAGCUCUUCU--CUCUGAAGAAGGGAGAG ---.......((((....((((((((.......))))))))--.((((((((...........)))))))))))).(((((((((...)))))))))(((--((((.....))))))). ( -36.90, z-score = -1.66, R) >droSec1.super_2 948935 112 - 7591821 ---ACAUAGGGCAUAUAUUUUUUCUGUGUGGCUUAGGAAAG--UGUGUGCCUAAUGUCCUUUGAGGCAUCCGAGUGCGAGCUGUCACAGACAGCUCUUCU--CUCUGAAGAAGGGAGAG ---((((.((((((((((((((.(((.......))))))))--))))))))).))))........((((....))))((((((((...)))))))).(((--((((.....))))))). ( -44.70, z-score = -3.59, R) >droYak2.chr3L 911174 116 - 24197627 ACAAAGUAUCACAAAUAUUUU-UCGGUGUACCUUAGGAAAG--UGUGUGCCCAAUGUCCUUUGAGGCCACCGAGUGCGAGCUGUCAAAGACAGCUCCUCCCGUUGUGAUGAAGGCAGAG ......((((((((......(-((((((..((((((((...--((......))...))))..)))).)))))))...((((((((...))))))))......))))))))......... ( -38.30, z-score = -3.24, R) >droEre2.scaffold_4784 939749 114 - 25762168 ---ACAUAUGACUAGUUUUUUCUCGGUGUGGCUUGGGAAAG--UGUGUGCCCAAUGUCCUUCGAGGCAACCGAGUGCGAGCUGUCAAAGACAGCUCUUCCAGCUGUGAUGAGGGGAUAG ---..............((..((((..(..(((.((((...--............(..((.((.(....)))))..)((((((((...)))))))))))))))..)..))))..))... ( -36.00, z-score = -0.55, R) >consensus ___ACAUAUGACAUAUAUUUUUUCUGUGUGGCUUAGGAAAG__UGUGUGCCUAAUGUCCUUUGAGGCAUCCGAGUGCGAGCUGUCAAAGACAGCUCUUCC_GCUGUGAAGAAGGGAGAG .................((((((((...(((....((((....((.((((((((......))).))))).)).....((((((((...))))))))))))....))).))))))))... (-23.34 = -23.46 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:40 2011