| Sequence ID | dm3.chr3L |
|---|---|
| Location | 920,620 – 920,715 |
| Length | 95 |
| Max. P | 0.665470 |
| Location | 920,620 – 920,715 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.45990 |
| G+C content | 0.41244 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -11.88 |
| Energy contribution | -11.96 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 920620 95 - 24543557 -------GACAGCAGUUAGGUACAAAUCGAACUGGGUCGCCUCGGUUUAAUUACUGUAAUGCCAUUAGAUAGACAACUCUGAGGUAGUUUACAUACUAGCUA--- -------......((((((.....(((..(((((((....)))))))..)))..(((((((((.(((((........)))))))))..)))))..)))))).--- ( -24.40, z-score = -1.35, R) >droEre2.scaffold_4784 930494 90 - 25762168 GUCAGCAGUUAGACACUAGACACAAAUCGAAUUGGGUCGACUCGGUUUAAUUACUUUAAUGCCAUUAGAUAGGCAACAUUGGGGUACUUU--------------- ......((((((((....(((.(((......))).)))......))))))))(((((((((((........))))...))))))).....--------------- ( -17.70, z-score = -0.93, R) >droYak2.chr3L 901563 84 - 24197627 GACAGCAGUUAGACACUAGACACAAAUCGAACUGGGUCGACUGGGUUUAAUUACUCUAAUGCCAUUAGAUAGGCAUACUAGCUG--------------------- .....(((((((....((((....(((..((((.((....)).))))..)))..))))(((((........))))).)))))))--------------------- ( -22.50, z-score = -2.73, R) >droSec1.super_2 939843 95 - 7591821 -------GACAGCAGUUAGGUACAAAUCGAACUGGGUCGCCUCGGUUUAAUUACUGUAAUGCCAUUAGAUAGGCAACUUUGAGGUAGUUUACAUACGGGAUA--- -------(((..(((((.(((....))).))))).)))..((((....(((((((.(((((((........))))...))).)))))))......))))...--- ( -23.70, z-score = -1.21, R) >droSim1.chr3L 564717 97 - 22553184 -------GACAGCAGUUAGGUGCAAAUCGAACUGGGUCGCCUCAGUUUAAUUAUUGUAAUGCCAUUAGAUAGGCAACUUUGAGGUAGUUUACAUACU-GCUAUAC -------...((((((...(((..(((..(((((((....)))))))..))).......((((.((((..((....))))))))))...)))..)))-))).... ( -25.50, z-score = -1.58, R) >consensus _______GACAGCAGUUAGGUACAAAUCGAACUGGGUCGCCUCGGUUUAAUUACUGUAAUGCCAUUAGAUAGGCAACUUUGAGGUAGUUUACAUAC__G_UA___ ........................(((..(((((((....)))))))..))).......((((........)))).............................. (-11.88 = -11.96 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:36 2011