| Sequence ID | dm3.chr3L |
|---|---|
| Location | 917,005 – 917,104 |
| Length | 99 |
| Max. P | 0.753621 |
| Location | 917,005 – 917,104 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.84 |
| Shannon entropy | 0.25627 |
| G+C content | 0.42857 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -19.10 |
| Energy contribution | -20.34 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 917005 99 - 24543557 UUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCCAAACCCAA .....((((((((((((((((....((.....)).)))))))))).))))))((((....((.(((((.......))))).)).....))))....... ( -26.90, z-score = -2.50, R) >droSim1.chr3L 561122 98 - 22553184 UUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCA-UUUCGAAACCGAA .....((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))-.((((....)))) ( -25.70, z-score = -1.21, R) >droYak2.chr3L 897067 99 - 24197627 UUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGAAACCGAA .....((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))..((((....)))) ( -25.70, z-score = -1.20, R) >droEre2.scaffold_4784 926784 99 - 25762168 UUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGAAACCGAA .....((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))..((((....)))) ( -25.70, z-score = -1.20, R) >droAna3.scaffold_13337 16297740 77 + 23293914 UUGACGUGAGAAUUUACACGUCCUUUGUUAUGCACGCGUGUAAAUGUUUCGCCGGAUUCUGAUUCCAUUUUCCACCC---------------------- .....((((((((((((((((....((.....)).)))))))))).)))))).(((...((....))...)))....---------------------- ( -19.00, z-score = -2.30, R) >consensus UUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGAAACCGAA .....((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..)))).............. (-19.10 = -20.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:35 2011