| Sequence ID | dm3.chr3L |
|---|---|
| Location | 913,432 – 913,485 |
| Length | 53 |
| Max. P | 0.924876 |
| Location | 913,432 – 913,485 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.15 |
| Shannon entropy | 0.10907 |
| G+C content | 0.44906 |
| Mean single sequence MFE | -9.52 |
| Consensus MFE | -9.38 |
| Energy contribution | -9.06 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 913432 53 + 24543557 CGAGUAAUCCAUUUGAUUACCAUCAUCAUUGGCAGGCCACUUAGAAUUGCCCG .(.((((((.....))))))).........(((((..(.....)..))))).. ( -10.10, z-score = -1.24, R) >droSim1.chr3L 557646 53 + 22553184 CGAGUAAUCCAUUUGAUUACCAUCAUCAUCGGCAGACCACUUAGAAUUGCCCG .(.((((((.....))))))).........(((((..(.....)..))))).. ( -9.20, z-score = -1.86, R) >droSec1.super_2 932931 53 + 7591821 CGAGUAAUCCAUUUGAUUACCAUCAUCAUCGGCAGACCACUUUGAAUUGCCCG .(.((((((.....))))))).........(((((..(.....)..))))).. ( -9.50, z-score = -1.64, R) >droYak2.chr3L 893329 53 + 24197627 CGAGUAAUCCAUUUGAUUACCAUCAUCAUAUGCAGACCACUUGGAAUUGCGCG .(.((((((.....)))))))..........((((.((....))..))))... ( -8.70, z-score = -0.64, R) >droEre2.scaffold_4784 923216 53 + 25762168 CGAGUAAUCCAUUUGAUUACCAUCAUCAUUGGCAGACCACUUAGAGUUGCCCG .(.((((((.....))))))).........(((((..(.....)..))))).. ( -10.10, z-score = -1.95, R) >consensus CGAGUAAUCCAUUUGAUUACCAUCAUCAUCGGCAGACCACUUAGAAUUGCCCG .(.((((((.....))))))).........(((((..(.....)..))))).. ( -9.38 = -9.06 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:34 2011