| Sequence ID | dm3.chr3L |
|---|---|
| Location | 799,627 – 799,740 |
| Length | 113 |
| Max. P | 0.823482 |
| Location | 799,627 – 799,740 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 94.30 |
| Shannon entropy | 0.09429 |
| G+C content | 0.54117 |
| Mean single sequence MFE | -37.34 |
| Consensus MFE | -32.98 |
| Energy contribution | -33.58 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 799627 113 + 24543557 ACCUCUGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGAUCGGAUCGAUGAGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCAUCCGCAGAAGAACAACUGCCU ......((((((.(((((((((.(((.........))).))))).((((((((.(..(((((((..((.....))..)))))))..)))).)))))..))))..)))).)).. ( -35.60, z-score = -1.26, R) >droSim1.chr3L 450507 113 + 22553184 ACCUCUGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGAUCGGAUCGAUGGGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCAUCCGCAGAAGAACAACUGCCU ......((((((.(((((((((.(((.........))).))))).((((((((.((((((((((..((.....))..))))))))))))).)))))..))))..)))).)).. ( -40.90, z-score = -2.43, R) >droSec1.super_2 820820 113 + 7591821 ACCUCUGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGAUCGGAUCGAUGGGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCAUCCGCAGAAGAACAACUGCCU ......((((((.(((((((((.(((.........))).))))).((((((((.((((((((((..((.....))..))))))))))))).)))))..))))..)))).)).. ( -40.90, z-score = -2.43, R) >droYak2.chr3L 794165 105 + 24197627 GCCUCCGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGA-----UCGAUGGGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCAUCCGCAGAAGAACAACUG--- ((....))((((.(((((...........((......)).((((-----((((.((((((((((..((.....))..))))))))))))).))))).)))))..))))..--- ( -34.50, z-score = -1.51, R) >droEre2.scaffold_4784 814759 105 + 25762168 ACCUCUGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGA-----UCGAUGGGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCCUCCGCAGAAGAACAACUG--- .(.((((((..((....(((((.(((.........))).)))))-----..((.((((((((((..((.....))..))))))))))))))...)))))).)........--- ( -34.80, z-score = -1.88, R) >consensus ACCUCUGCGUUGCCUUCUCCGUAUGCAAAUCUCAAGUGAACGGAUCGGAUCGAUGGGGCCGCAAAAGAGGUCGUCAAUUGUGGCUCCUCGCAUCCGCAGAAGAACAACUGCCU .(.((((((.(((....(((((.(((.........))).))))).......((.((((((((((..((.....))..)))))))))))))))..)))))).)........... (-32.98 = -33.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:20 2011