| Sequence ID | dm3.chr3L |
|---|---|
| Location | 799,226 – 799,321 |
| Length | 95 |
| Max. P | 0.689819 |
| Location | 799,226 – 799,321 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.38 |
| Shannon entropy | 0.37455 |
| G+C content | 0.39780 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.74 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 799226 95 + 24543557 UGAUAUACUUGCGCCUGAAAAUCCGAAUGG-CAUGCAAGGGUA----UAUGAGUUCUCUGUUUUUUAGGGGCAAGUAAAUAACAUAGAGGAUGUUGUGCU .....(((((((.((((((((...((((..-((((........----)))).)))).....)))))))).))))))).(((((((.....)))))))... ( -27.80, z-score = -2.34, R) >droAna3.scaffold_13337 11763497 83 + 23293914 UGAUUCGGUAG-----AAAAUUUCAUGGGAUCAUUCAAGGGA------------UCUGCGCUUUUUAGGGGCAAGUAAAUAUCAUGGAGGAUGUUUUCCC ((((((.((.(-----(.....)))).)))))).....((((------------..(((.((.....)).)))...(((((((......))))))))))) ( -19.40, z-score = -0.66, R) >droEre2.scaffold_4784 814306 93 + 25762168 UGAUUCGCUUGCCCCUAAAAGUCCAAAUGG-UAUGUAAGGGUA------UGAGUUCUCCGUUUUUUAGGGGCAAGUAAAUAAAAUAGAGGAUGUUAUGCU ..(((..(((((((((((((.....(((((-......((..(.------...)..))))))))))))))))))))..))).................... ( -25.80, z-score = -2.28, R) >droYak2.chr3L 793724 92 + 24197627 UGAUUCGCUUGCCCCUAAAAAUCCAAAUG--UAUGCAAGGGUA------UGAGUUCCCUGCUUUUUAGGGGCAAGUAAAUAACAUAGAGGAUGUUAUGCU ......(((((((((((((((........--...(((.(((..------......)))))))))))))))))))))..(((((((.....)))))))... ( -33.40, z-score = -4.10, R) >droSec1.super_2 820388 99 + 7591821 UGAUUCGCUUGCGCCUGAAAAUCCGAAUGG-CAUGCAAAGGUACAUAUAUGAGUUCUCUGUUUUUUAGGGGCAAGUAAAUAACAUAGAGGAUGUUGUGAU ......((((((.((((((((...((((..-((((............)))).)))).....)))))))).))))))..(((((((.....)))))))... ( -25.60, z-score = -1.37, R) >droSim1.chr3L 450086 99 + 22553184 UGAUUCGCUUGCGCCUGAAAAUCCGAAUGG-CAUGCAAAGGUACAUAUAUGAGUUCUCUGUUUUUUAGGGGCAAGUAAAUAACAUAGAGGAUGUUGUCAU ......((((((.((((((((...((((..-((((............)))).)))).....)))))))).))))))..(((((((.....)))))))... ( -25.00, z-score = -1.15, R) >consensus UGAUUCGCUUGCGCCUAAAAAUCCAAAUGG_CAUGCAAGGGUA______UGAGUUCUCUGUUUUUUAGGGGCAAGUAAAUAACAUAGAGGAUGUUGUGCU ......((((((.((((((((.((....))....(((.(((.............))).))))))))))).))))))..(((((((.....)))))))... (-13.90 = -14.74 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:19 2011