| Sequence ID | dm3.chr3L |
|---|---|
| Location | 796,925 – 797,019 |
| Length | 94 |
| Max. P | 0.798926 |
| Location | 796,925 – 797,019 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.00 |
| Shannon entropy | 0.49586 |
| G+C content | 0.48430 |
| Mean single sequence MFE | -18.31 |
| Consensus MFE | -7.88 |
| Energy contribution | -9.27 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 796925 94 + 24543557 ---------------AUCCGCCACAGAUACGGAUACAUAUCC-UCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA-CUUUAAUGGCAGUCAACCC---AACAU ---------------.(((((..(((....((((....))))-.......(((((.....))))))))..))).))..........-......(((........))---).... ( -19.90, z-score = -2.80, R) >droAna3.scaffold_13337 11760194 73 + 23293914 ---------------AUCCGACAUGGAUACAUACUCGUA---------------CAUCC------CCGGAGCGAGAACAAACCAAA-CUUUAAUGGCAGUAAACC----AACAU ---------------........(((.(((...(((((.---------------..((.------...)))))))......(((..-......)))..)))..))----).... ( -11.10, z-score = -0.71, R) >droEre2.scaffold_4784 811885 94 + 25762168 ---------------AUCCGCCACAGAUACGGAUUCAUGUCCCUCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA-CUUUAAUGGCAGUCAACC----AACAU ---------------....((((.......((((....))))(((...(((((((.....))))).))....)))...........-......))))........----..... ( -20.40, z-score = -1.95, R) >droYak2.chr3L 791393 93 + 24197627 ---------------AUCCGCCACAGAUACGGAUUCAUGUCC-UCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA-CUUUAAUGGCAGUCAACC----AACAU ---------------.(((((..(((....((((....))))-.......(((((.....))))))))..))).))..........-......(((.......))----).... ( -20.60, z-score = -2.03, R) >droSec1.super_2 818029 93 + 7591821 ---------------AUCCGCCACAGAUACGGAUUCAUAUCC-UCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA-CUUUAAUGGCAGUCAACC----AACAU ---------------.(((((..(((....((((....))))-.......(((((.....))))))))..))).))..........-......(((.......))----).... ( -20.30, z-score = -2.71, R) >droSim1.chr3L 447736 93 + 22553184 ---------------AUCCGCCACAGAUACGGAUUCAUAUCC-UCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA-CUUUAAUGGCAGUCAACC----AACAU ---------------.(((((..(((....((((....))))-.......(((((.....))))))))..))).))..........-......(((.......))----).... ( -20.30, z-score = -2.71, R) >droWil1.scaffold_180698 9022295 114 + 11422946 AACCACCAGAAAAACCCCAGCCACACUCCCCACGGCCCCCGCCUAAGCCGUUGUCCUAUUCCUUACAAUUUCGAGGACAAACCAAAACUUUAAUGUUACUGAACCCGAGAGCAU .................(((..(((......(((((..........)))))((((((................))))))..............)))..)))............. ( -15.59, z-score = -0.83, R) >consensus _______________AUCCGCCACAGAUACGGAUUCAUAUCC_UCAACCACUGGCACCCAGCCAGCUGAAGCGAGAACAAACCAAA_CUUUAAUGGCAGUCAACC____AACAU ................(((((..(((....((((....))))........(((((.....))))))))..))).))...................................... ( -7.88 = -9.27 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:18 2011