| Sequence ID | dm3.chr3L |
|---|---|
| Location | 776,997 – 777,089 |
| Length | 92 |
| Max. P | 0.574240 |
| Location | 776,997 – 777,089 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.13 |
| Shannon entropy | 0.40798 |
| G+C content | 0.46696 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -8.50 |
| Energy contribution | -9.70 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 776997 92 - 24543557 CAGCUGACAACUUUAUCUUUAUCAGAGAUGAUGUUGUGCAUCAUCCCUCAACCCCGCAACCCCUUAGU-CUUCGAUUCCAUACAUC--UAGAUCC---------- ..((..(((((.(((((((.....))))))).)))))))...........................((-((..(((.......)))--.))))..---------- ( -13.50, z-score = -0.97, R) >droSec1.super_2 796544 91 - 7591821 CAGCUGACAACUUUAUCUUUAUCAGAGAUGAUGUUGUGCAUCAUCCCUCAACCCC-CAACCCCUCAGU-CCUCGAUUCCAUACAUC--UAGAUCC---------- ..(((((........(((.....)))(((((((.....)))))))..........-.......)))))-.((.(((.......)))--.))....---------- ( -13.00, z-score = -0.94, R) >droYak2.chr3L 771550 84 - 24197627 CAGCUGACAACUUUAUCUUUAUCAGAGAUGAUGUUGUGCAUCAACCCUCAACCCCUCAGC---------UCUCGAUUCCAUACAUC--UAGAUCC---------- ..(((((((((.(((((((.....))))))).))))...................)))))---------(((.(((.......)))--.)))...---------- ( -14.90, z-score = -1.41, R) >droEre2.scaffold_4784 790263 93 - 25762168 CAGCUGACAACUUUAUCUUUAUCAGAGAUGAUGUUGUGCAUCAUCCCUCAACCCCUCAACCCCUCAACGCCUCGAUUCCAUACAUC--UAGAUCC---------- ..((..(((((.(((((((.....))))))).)))))))...............................((.(((.......)))--.))....---------- ( -12.60, z-score = -1.05, R) >droAna3.scaffold_13337 11736715 101 - 23293914 CAGCUGACAACUUUAUCUUUAUCAG---CGAUGUUGCACAUCCCAACCCCGAGCACCGAGCCCCGAAC-CCUGAACCUCAGAAACCCUUAGAACCCCUCUAAACC ..(((((.((........)).))))---)((((.....)))).......((.((.....))..))...-.(((.....)))......(((((.....)))))... ( -14.20, z-score = -2.33, R) >consensus CAGCUGACAACUUUAUCUUUAUCAGAGAUGAUGUUGUGCAUCAUCCCUCAACCCCUCAACCCCUCAAC_CCUCGAUUCCAUACAUC__UAGAUCC__________ ..((..(((((.(((((((.....))))))).))))))).................................................................. ( -8.50 = -9.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:10 2011