| Sequence ID | dm3.chr3L |
|---|---|
| Location | 764,148 – 764,248 |
| Length | 100 |
| Max. P | 0.660872 |
| Location | 764,148 – 764,248 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Shannon entropy | 0.39362 |
| G+C content | 0.39153 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.47 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 764148 100 + 24543557 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUUAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGAAAACACAA---CAAAAACA---CAAAAGU-------- ------...((((((.((((((((((..(((........)))..)))))....((....))....)))))....))))))...........---........---.......-------- ( -16.30, z-score = -1.51, R) >droSim1.chr3L 415180 99 + 22553184 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGAAAACACAA---CAAAA-CA---CAAAAGU-------- ------...((((((.((((((((((..(((........)))..)))))....((....))....)))))....))))))...........---.....-..---.......-------- ( -16.30, z-score = -1.58, R) >droSec1.super_2 783744 99 + 7591821 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGAAAACACAA---CAAAA-CA---CAAAAGU-------- ------...((((((.((((((((((..(((........)))..)))))....((....))....)))))....))))))...........---.....-..---.......-------- ( -16.30, z-score = -1.58, R) >droEre2.scaffold_4784 777015 99 + 25762168 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGAAAACACAA---CAAAA-CA---CAAAAAU-------- ------...((((((.((((((((((..(((........)))..)))))....((....))....)))))....))))))...........---.....-..---.......-------- ( -16.30, z-score = -1.83, R) >droAna3.scaffold_13337 11714576 106 + 23293914 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGACACAAAAAUAACAACAGAAACGGGCCAGAAAC-------- ------((((.((...((((.(((((..(((........)))..)))))....(((((......))..((......)))))................))))..))))))...-------- ( -17.40, z-score = -1.03, R) >dp4.chrXR_group8 4738474 101 - 9212921 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCGAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGCAAACACAAA--CAAACACA---CACAGAU-------- ------(((((((........(((((..(((........)))..)))))...................((......))).))))))......--........---.......-------- ( -16.80, z-score = -1.18, R) >droPer1.super_29 389691 109 - 1099123 ------UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCGAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGCAAACACAAA--CAAACACA---CAAACACACACAGAC ------(((((((........(((((..(((........)))..)))))...................((......))).))))))......--........---............... ( -16.80, z-score = -1.18, R) >droWil1.scaffold_180698 8969721 101 + 11422946 --UCUCUCUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGGUACACAAGAAAAU-CAAACCAAGC---------------- --.....((((((.((((((((((((..(((........)))..)))))...........))))))).))......)))).............-..........---------------- ( -13.90, z-score = -0.06, R) >droVir3.scaffold_13049 16372677 92 - 25233164 GUUGUCUCAGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGCUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGGC-CACACGAAGCC--------------------------- ((.(((.((..((.((((((((((((..................)))))...........))))))).)).....)).)))-.))........--------------------------- ( -14.87, z-score = 0.56, R) >droMoj3.scaffold_6680 6481229 92 + 24764193 GUUGGCUCGGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGCUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGGC-CACACGGAGCC--------------------------- ...(((((((.((.((((((((((((..................)))))...........))))))).)))).....((..-....)))))))--------------------------- ( -23.27, z-score = -0.71, R) >droGri2.scaffold_15110 19949907 90 - 24565398 GUUGCCUGUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCAGC-CAAACUAAA----------------------------- (((((.((((.((.((((((((((((..(((........)))..)))))...........))))))).)).)))).)))))-.........----------------------------- ( -24.90, z-score = -3.83, R) >consensus ______UUUGCGCAUAGUUUAGGCCAGAUAAAUCUCAAGUUAAAUGGCCAAAAGUCAAAAUAAAUUAAGCCCACAUGCGCCGCAAACACAA___CAAAA_CA___CAAAA_U________ ..........(((((.((((((((((..(((........)))..)))))....((....))....)))))....)))))......................................... (-12.20 = -12.47 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:08 2011