| Sequence ID | dm3.chr3L |
|---|---|
| Location | 763,156 – 763,212 |
| Length | 56 |
| Max. P | 0.952718 |
| Location | 763,156 – 763,212 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 92.66 |
| Shannon entropy | 0.11590 |
| G+C content | 0.61189 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -21.61 |
| Energy contribution | -21.93 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 763156 56 + 24543557 GGAUGAGUUCGAGAUCGAAUGGUCUCGGAUCAGGCCGGGCGGGCCGUCAUCCGCUA ((((((((((((((((....))))))))))..((((.....)))).)))))).... ( -28.60, z-score = -3.10, R) >droSim1.chr3L 414205 53 + 22553184 GGAUGAGUUCGAGAUCGAAUGGUCUCGGAUCAGGCCGGGUGGGCC---AUCCGCUC ((((((.(((((((((....))))))))))).((((.....))))---)))).... ( -24.20, z-score = -2.30, R) >droSec1.super_2 782773 53 + 7591821 GGAUGAGUUCGAGAUCGAAUGGUCUCGGAUCAGGCCAGGCGGGCC---AUCCGCUA ((((((.(((((((((....))))))))))).((((.....))))---)))).... ( -24.00, z-score = -2.46, R) >droYak2.chr3L 757434 52 + 24197627 GGAUGAGUUCGAGAUCGAAUGGUAUCGGAUCAGGCCGGGCGG-CC---AUCCGCUA .((((.(((((....)))))..))))((((..((((....))-))---)))).... ( -19.80, z-score = -1.24, R) >consensus GGAUGAGUUCGAGAUCGAAUGGUCUCGGAUCAGGCCGGGCGGGCC___AUCCGCUA ((.(((.(((((((((....))))))))))))..)).((((((......)))))). (-21.61 = -21.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:07 2011