| Sequence ID | dm3.chr3L |
|---|---|
| Location | 756,702 – 756,795 |
| Length | 93 |
| Max. P | 0.521531 |
| Location | 756,702 – 756,795 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.68 |
| Shannon entropy | 0.50288 |
| G+C content | 0.58633 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -12.84 |
| Energy contribution | -14.06 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 756702 93 + 24543557 GCUGGCGGAAGUUGGCCAGAAAAGCCAGAAAGUCGGACGGCAGCUGACGAUCGGGAAU-AAUGGCUGUGGGUCGAGAAAUGAGACACCGAAGGC (((..(((.....(((((......((.((..(((((.(....))))))..)).))...-..)))))....(((.(....)..))).)))..))) ( -29.00, z-score = -1.61, R) >droSim1.chr3L 407844 77 + 22553184 GCUGGCGGAAGUUGGCCAGGAAAGCCAGAAAA----------------GAUCGGGAAU-AAUGGCUGUGGGUCGAGAAAUGGGAACCCGAAGGC ((..((....))..))......(((((.....----------------..........-..))))).((((((.(....).)..)))))..... ( -21.13, z-score = -1.01, R) >droSec1.super_2 776492 77 + 7591821 GCUGGCGGAAGUUGGCCAGAAAAGCCAGAAAA----------------GAUCGGGAAU-AAUGGCUGUGGGUCGAGAAAUGGGAACCCGAAGGC ((..((....))..))......(((((.....----------------..........-..))))).((((((.(....).)..)))))..... ( -21.13, z-score = -1.21, R) >droYak2.chr3L 750643 94 + 24197627 GCUGGCGGAAGUUGGCAAGAAAAGCCAGAAAGUCGGACGGCAGCUGACGACCGGGAGGGAAUGGCUCUGGGUCGAGAAAUGGGACCCCGAAGGC ((..((....))..)).......(((.....(((((.(....))))))((((.((((.......)))).))))......(((....)))..))) ( -36.30, z-score = -2.27, R) >droEre2.scaffold_4784 769302 93 + 25762168 GCUGGCGGAAGUUGGCAAGAAAAGCCAGAAAGUCGGACGGCAGCUGACGAUCGGAGGG-AAUGGCUGUGGGUCGAGAAAUGGGACCCCGAAGGC ((..((....))..)).......(((......(((..(.((((((.............-...)))))).)..)))....(((....)))..))) ( -31.19, z-score = -1.56, R) >droAna3.scaffold_13337 11706481 88 + 23293914 GCUGGCGGAAGUUG-CAACAUCUGCAGCGGAGUCGGG----AUCGGGCGCUGGGGUUAAAGCCGGACUUGGCUUAGAAACCAGAG-CCGAGGCC .(((((....((((-((.....))))))...))))).----....(((.((((..((.((((((....)))))).))..)))).)-))...... ( -36.30, z-score = -1.63, R) >consensus GCUGGCGGAAGUUGGCAAGAAAAGCCAGAAAGUCGGA____AGCUGACGAUCGGGAAU_AAUGGCUGUGGGUCGAGAAAUGGGACCCCGAAGGC ((..((....))..))......(((((....(((((.......))))).............))))).((((((.........)).))))..... (-12.84 = -14.06 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:05 2011