| Sequence ID | dm3.chr3L |
|---|---|
| Location | 721,331 – 721,429 |
| Length | 98 |
| Max. P | 0.551061 |
| Location | 721,331 – 721,429 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.50 |
| Shannon entropy | 0.29380 |
| G+C content | 0.45846 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -13.38 |
| Energy contribution | -13.64 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 721331 98 + 24543557 ---UGUUGU-CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGCUCAAGCUCUU---- ---......-..........(((((.................(((((((......)))))))((((((.....)))))).)))))....(((....)))...---- ( -21.10, z-score = -2.53, R) >droPer1.super_29 344753 98 - 1099123 ---UGUUGU-CCAUUGAAAUGUCGCCGUGCGGCUCCUAAAAUAUUCAAAUCUUCUUUUGAAUGUCUUGUAAAACGAGGCACUGACCCCCAAUGCGAAUGCGG---- ---.((..(-((((((....((((((....))).........(((((((......)))))))((((((.....))))))...)))...))))).))..))..---- ( -24.20, z-score = -2.02, R) >dp4.chrXR_group8 4693986 98 - 9212921 ---UGUUGU-CCAUUGAAAUGUCGCCGUGCGGCUCCUAAAAUAUUCAAAUCUUCUUUUGAAUGUCUUGUAAAACGAGGCACUGACCCCCAAUGCGAAUGCGG---- ---.((..(-((((((....((((((....))).........(((((((......)))))))((((((.....))))))...)))...))))).))..))..---- ( -24.20, z-score = -2.02, R) >droAna3.scaffold_13337 11667511 101 + 23293914 ---UGUUGU-CCAUUGAAAUGUCGCCGUGCGGCUCCUAAAAUAUUCAAAUCUCCUUUUGAAAGCCUUGUAAAACGAGCCACUGACCCCCAACCCGGAGAUCUCCA- ---.(((((-(....))...(((((...))(((((........((((((......))))))......(.....))))))...)))...))))..(((....))).- ( -17.10, z-score = -0.56, R) >droEre2.scaffold_4784 731595 102 + 25762168 ---UGUUGU-CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGUUCGAGCGAGCUCUU ---......-..........(((((.................(((((((......)))))))((((((.....)))))).)))))....(((((....)))))... ( -23.50, z-score = -2.33, R) >droYak2.chr3L 713553 98 + 24197627 ---UGUUGU-CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGCUCGAGCUCAG---- ---......-....(((...(((((.................(((((((......)))))))((((((.....)))))).))))).....((....))))).---- ( -21.30, z-score = -2.15, R) >droSec1.super_2 741330 98 + 7591821 ---UGUUGU-CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGCUCGAGCUCUU---- ---......-..........(((((.................(((((((......)))))))((((((.....)))))).)))))....(((....)))...---- ( -21.10, z-score = -2.20, R) >droSim1.chr3L 370759 98 + 22553184 ---UGUUGU-CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGCUCGAGCUCUU---- ---......-..........(((((.................(((((((......)))))))((((((.....)))))).)))))....(((....)))...---- ( -21.10, z-score = -2.20, R) >droWil1.scaffold_180698 8914115 101 + 11422946 UGCCGCCGUUCCAUUCAAAUGUCGCCAUGCG-CUCCUAAAAUAUGCAAAGCUUUUUUUGAAUGUCUUGUAAAACGAUGCACUGACCCCGGUGGUGUGUGUAU---- .(((((((....(((((((....((..((((-...........))))..))....)))))))(((.((((......))))..)))..)))))))........---- ( -24.30, z-score = -1.24, R) >consensus ___UGUUGU_CCAUUGAAAUGUCGCCGUGUGCCUCCUAAAAUAUUCAAAUCUCCUUUUGAAUGCCUUGUAAAACGAGGCAGUGACCCCCAGCUCGAGCGCGU____ ....................(((...................(((((((......)))))))((((((.....))))))...)))..................... (-13.38 = -13.64 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:02 2011