| Sequence ID | dm3.chr3L |
|---|---|
| Location | 713,145 – 713,258 |
| Length | 113 |
| Max. P | 0.955610 |
| Location | 713,145 – 713,258 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.49 |
| Shannon entropy | 0.65576 |
| G+C content | 0.39169 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -13.06 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 713145 113 + 24543557 GCCAAGGUGAGAUCGUUAAACAACUGACUGGUGAGUUGUUCUUUUAUGGCUUACAU---CUCACCCAA----GCACUGAAAAUAAUCGGAAUAUAACUAAAAUCUACGACAUGGCUAUAA ((((.((((((((.((((......))))..((((((..(......)..))))))))---))))))...----...((((......))))......................))))..... ( -30.10, z-score = -3.33, R) >droSim1.chr3L 362639 113 + 22553184 GCCAAGGUGAGAUCGUUGAACAACUGACUGCUGAGCUGUUCUUUUAUGGCUUACAU---CUCACCCAA----GCACUGAAAAUAAUCGGAAUAUAACUUAGGUCUACGAUAUGACUGUGA ((...((((((((.(((....))).......((((((((......)))))))).))---))))))...----)).((((......))))...........((((........)))).... ( -26.70, z-score = -1.20, R) >droSec1.super_2 733169 113 + 7591821 GCCAAGGUGAGAUCGUUGAACAACUGACUGGUGAGCUGUUCUUUUAUGGCUUACAU---CUCACCCAA----GCACUGAAAAUAAUCGGAAUAUACCUUAGGUCUACGAUUUGACUGUGA ((...((((((((.(((....)))......(((((((((......)))))))))))---))))))...----)).((((......))))...........((((........)))).... ( -30.50, z-score = -1.85, R) >droYak2.chr3L 705169 111 + 24197627 GCCAAGGUGAGAUCGUUAAACAAUUGACUAGUGAGCUGUUCUUUUAUGGCUCACCUCACCUUACUUAAAAUUGUUCCUACAACAAUCGAAA---------AAGUGCCGACAUUGCUGUGG ...((((((((...(((((....)))))..(((((((((......)))))))))))))))))..............(((((.((((((...---------......)))..))).))))) ( -31.50, z-score = -3.28, R) >droEre2.scaffold_4784 723270 118 + 25762168 GCGAAGGUUGGAUCGUUAAACAAUUGACUAGUGAGUUGUUCUUUUAUGACUUACCC--ACGCACUGAAAACUGUUUUUACAACAAUCGGAAUAAGGCAGAAAGUGCCGAUAUUGCUGUGG ((....))......(((((....)))))..((((((..(......)..))))))((--(((((((((....(((....)))....)))).....((((.....)))).....))).)))) ( -26.10, z-score = -0.18, R) >droAna3.scaffold_13337 11657926 104 + 23293914 GUCGAGGUGAGAUCGAUUUACUCUACCCCCAUAAG----UCUAUCAAGGAAUAUAG---UUUACUUAUA---ACACUAAGAAAAA--AGGAUUAAUAGAGAAUUUUAGAUAUCUUA---- .((..((((.(((.((((((...........))))----)).)))......(((((---.....)))))---.))))..))....--(((((...((((....))))...))))).---- ( -11.80, z-score = 1.85, R) >consensus GCCAAGGUGAGAUCGUUAAACAACUGACUGGUGAGCUGUUCUUUUAUGGCUUACAU___CUCACCCAA____GCACUGAAAAUAAUCGGAAUAUAACUAAAAUCUACGAUAUGGCUGUGA .....((((((...((((......))))..(((((((((......))))))))).....))))))....................................................... (-13.06 = -13.12 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:01 2011