| Sequence ID | dm3.chr3L |
|---|---|
| Location | 708,262 – 708,353 |
| Length | 91 |
| Max. P | 0.524539 |
| Location | 708,262 – 708,353 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 56.13 |
| Shannon entropy | 0.74994 |
| G+C content | 0.53000 |
| Mean single sequence MFE | -30.66 |
| Consensus MFE | -5.99 |
| Energy contribution | -6.19 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 708262 91 + 24543557 ------ACCGUAUCUUUGCGAGAGACAUUCCGCUCUUUCU-CUCGCGAUCUAAACCGACUUCCCACGUUCC--GAUUCCGAUCGUGG-----UGGUAUUC-GUUCG- ------((((.....((((((((((............)))-)))))))..............(((((...(--(....))..)))))-----))))....-.....- ( -24.10, z-score = -1.41, R) >droYak2.chr3L 700150 96 + 24197627 ------ACCGGAUCUUCGCGAGAGACAUUCCGCUCUUUCU-CUCGCGAUCUAAACCGACUUCCCACGAUCC--GAUCGCAGCUACAAGUCUGCGGUAUUC-GUUUG- ------..((((((.((((((((((............)))-)))))))((......))........)))))--)((((((((.....).)))))))....-.....- ( -33.60, z-score = -3.84, R) >droEre2.scaffold_4784 718303 98 + 25762168 ------ACCGGAUCUUUGCGAGAGACAUUCCGCUCUUUCG-CUCGCGAUCUAAACCGACUUCCCACGUAAC--GAUCGCAGCUACAAGUCGCUGGUAUUCCGUUUGG ------(((((..(((.((((((((........)))))))-)..((((((.....((........))....--))))))......)))...)))))........... ( -26.10, z-score = -0.81, R) >droVir3.scaffold_13049 16305937 88 - 25233164 CUUGUUUACGGAGAGU-GCGAGAG-CGUUCUGCUCUCUG----CGCGCUCUCUGCAGCUCUCUGUUAUUGC--GAUCGGAAGUGCGUGU-GUGUGUG---------- .......(((((((((-(((((((-(((...((.....)----))))))))).))).))))))))....((--(..(....)..)))..-.......---------- ( -34.40, z-score = -1.90, R) >droMoj3.scaffold_6680 6418409 101 + 24764193 CUUGUUUACGGAGAGU-GAGAGAG-CGCACUGCUCUGUUUUCUCUCGCUCUCGUCUACUCUAUGUCGCUCUCUGAUCGUGAAUGUGUGCCAUACAUGCGCAGG---- ...(((((((((((((-(((((((-.(((......))).)))))))))))))...........((((.....))))))))))).(((((.......)))))..---- ( -35.10, z-score = -1.94, R) >consensus ______ACCGGAUCUU_GCGAGAGACAUUCCGCUCUUUCU_CUCGCGAUCUAAACCGACUUCCCACGUUCC__GAUCGCAACUGCGAGUCGUUGGUAUUC_GUU_G_ .........(((((...(((((...................))))))))))........................................................ ( -5.99 = -6.19 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:54:00 2011