| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,071,651 – 4,071,709 |
| Length | 58 |
| Max. P | 0.963768 |
| Location | 4,071,651 – 4,071,709 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 91.38 |
| Shannon entropy | 0.14728 |
| G+C content | 0.38966 |
| Mean single sequence MFE | -13.04 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.36 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4071651 58 + 23011544 AUUCAGUGCCGUAGAAUUGCUCUCAUACUCGGGUUCUACACUGAAAAUAAAUCAACCU .((((((...(((((...((((........)))))))))))))))............. ( -12.30, z-score = -2.52, R) >droSim1.chr2L 4025633 58 + 22036055 AUUCAGUGCCGUAGAAUUGCUCUCAUACUUGGGCUCUACACUGAAAAUAAAUGAACCU .((((((...(((((...((((........)))))))))))))))............. ( -14.30, z-score = -2.91, R) >droSec1.super_5 2170705 58 + 5866729 AUUCAGUGCCGUAGAAUUGCUCUCAUACUUGGGCUCUACACUGAAAAUAAAUGAACUU .((((((...(((((...((((........)))))))))))))))............. ( -14.30, z-score = -2.98, R) >droYak2.chr2L 4088563 58 + 22324452 AUUCAGUGCCGUAGAAUUGGUCUCAUACUCGGGCUCUACACUGAAAAUAAAAUUAACU .((((((...(((((....((((.......)))))))))))))))............. ( -10.80, z-score = -1.57, R) >droEre2.scaffold_4929 4129493 58 + 26641161 AUUCAGUGCCGUAGAAUUGGUCUCAUGCUCGGGUUCUACACUGAAAAUAAAAUUACCU .((((((...((((((((.(.........).))))))))))))))............. ( -13.50, z-score = -2.11, R) >consensus AUUCAGUGCCGUAGAAUUGCUCUCAUACUCGGGCUCUACACUGAAAAUAAAUGAACCU .((((((...(((((...((((........)))))))))))))))............. (-11.20 = -11.36 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:16 2011