| Sequence ID | dm3.chr3L |
|---|---|
| Location | 698,438 – 698,500 |
| Length | 62 |
| Max. P | 0.555528 |
| Location | 698,438 – 698,500 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 75.71 |
| Shannon entropy | 0.46258 |
| G+C content | 0.46868 |
| Mean single sequence MFE | -13.08 |
| Consensus MFE | -7.75 |
| Energy contribution | -8.53 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 698438 62 + 24543557 UCCGAUUGCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUCUUCCCGAGAAGCACGUUUAUU ......(((.....((((((((.....))))))))..((((.....)))).)))........ ( -15.50, z-score = -1.67, R) >droYak2.chr3L 688665 60 + 24197627 UCCGAUUUCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUU--CCCGAGGAGCACGUUCAUU ..((..........((((((((.....)))))))).(((((--....)))))..))...... ( -13.90, z-score = -0.49, R) >droEre2.scaffold_4784 708294 60 + 25762168 UCCGAUUUCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUC--CCCGAGGAGCACGCUUAUU ..((..........((((((((.....))))))))...(((--(....))))..))...... ( -14.10, z-score = -0.64, R) >droSec1.super_2 718435 59 + 7591821 UCCGAUUGCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUC---CCGAGAAGCACGUUUAUU ......(((.....((((((((.....))))))))((((..---..)))).)))........ ( -15.50, z-score = -1.86, R) >droSim1.chr3L 347903 60 + 22553184 UCCGAUUGCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUC--CCCGAGAAGCACGUUUAUU ......(((.....((((((((.....))))))))((((..--...)))).)))........ ( -15.50, z-score = -1.82, R) >droGri2.scaffold_15110 19862613 50 - 24565398 -------UUCAUUUAAUUGUU-CCACUUGCAACACUGUUUCU-UAUCAGCUACAAGUUU--- -------..............-..(((((.....(((.....-...)))...)))))..--- ( -4.00, z-score = -0.39, R) >consensus UCCGAUUGCCAAUUGUCCUUGGCCGAUUCAAGGACUCUCUC__CCCGAGAAGCACGUUUAUU ..............((((((((.....))))))))((((.......))))............ ( -7.75 = -8.53 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:57 2011