| Sequence ID | dm3.chr3L |
|---|---|
| Location | 684,910 – 685,023 |
| Length | 113 |
| Max. P | 0.924230 |
| Location | 684,910 – 685,023 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Shannon entropy | 0.40438 |
| G+C content | 0.42265 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.41 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 684910 113 + 24543557 ----CAUACUCAUUCAAGCUUAUAUACAAAUAAACGCCUAGAUCAAGUCAUUUACACUC--GUGUUCUUUGAGAAGUGA-AAUGGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC ----...............................((((((.(((((((.(((((.(((--(.......))))..))))-).(..((((....))))..)...)))))))))).)))... ( -29.30, z-score = -1.62, R) >droSim1.chr3L 334309 97 + 22553184 --------------------GAAAUAAAAUAAAACGCCUAGAUCAAGUCAUUUACACUC--GUGUUCUUUGAGGAGUGA-UAUGGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC --------------------...............((((((.(((((((.....(((((--.(........).))))).-..(..((((....))))..)...)))))))))).)))... ( -31.00, z-score = -3.34, R) >droSec1.super_2 705501 97 + 7591821 --------------------UAAAUAAAAUAAAACGCCUAGAUCAAGUCAUUUACACUC--GUGUUCUUUGAGGAGUGA-UAUGGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC --------------------...............((((((.(((((((.....(((((--.(........).))))).-..(..((((....))))..)...)))))))))).)))... ( -31.00, z-score = -3.44, R) >droYak2.chr3L 674387 119 + 24197627 -CAAAAGAGUCCUUCAAUCUUAUAGGAUAUAAAACUCCUAGAUCAUGUCAUUUGCACUUUUGCGUUUUUUGAGCAGUGAAUAUGGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC -...((((.........)))).(((((........)))))(..(((((((...((.(((((((.........))))......(..((((....))))..).))))).)))).)))..).. ( -26.20, z-score = 0.39, R) >droEre2.scaffold_4784 694030 107 + 25762168 UUAUCUUACUCCUUCAAGCUUAUAGGAAAUAAAACGCCUAGAUCAAGU-------------GCGUUCUUUGUGCAGUGAAAAUAGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC .....((((....((((((((...(.(((.......((((..(((.(.-------------.((.....))..)..)))...))))(((....)))))).).))))))))..)))).... ( -26.40, z-score = -0.45, R) >consensus _______A_UC_UUCAA_CUUAUAUAAAAUAAAACGCCUAGAUCAAGUCAUUUACACUC__GUGUUCUUUGAGCAGUGA_UAUGGGGUGGAAACACUUUGCGAGGCUUGACUGUGGCCAC ...................................((((((.(((((((.....((((................)))).....((((((....))))))....)))))))))).)))... (-20.17 = -21.41 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:50 2011