| Sequence ID | dm3.chr3L |
|---|---|
| Location | 670,106 – 670,159 |
| Length | 53 |
| Max. P | 0.978598 |
| Location | 670,106 – 670,159 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Shannon entropy | 0.41454 |
| G+C content | 0.51785 |
| Mean single sequence MFE | -15.52 |
| Consensus MFE | -9.90 |
| Energy contribution | -11.28 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 670106 53 + 24543557 AGGCAGCCAAAUGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUAUGUUGA ...((((....(((((...(((((....)))))......)))))....)))). ( -19.00, z-score = -1.52, R) >droSec1.super_2 690355 53 + 7591821 AGGCAGCCAAACGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUACGUUGA ...((((....(((((....)))))..(((((.......)))))....)))). ( -20.80, z-score = -2.23, R) >droSim1.chr3L 319469 53 + 22553184 AGGCAGCCAAAUGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUAUGUUGA ...((((....(((((...(((((....)))))......)))))....)))). ( -19.00, z-score = -1.52, R) >droMoj3.scaffold_6680 6377803 51 + 24764193 UGGCAGCAAAGAUACGAGUUA--UAGACAACCAGAUAAAGCCAAAUACUUCGA ((((.(........)(.(((.--.....)))).......)))).......... ( -3.30, z-score = 0.34, R) >consensus AGGCAGCCAAAUGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUACGUUGA ...((((....(((((...(((((....)))))......)))))....)))). ( -9.90 = -11.28 + 1.38)
| Location | 670,106 – 670,159 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 74.53 |
| Shannon entropy | 0.41454 |
| G+C content | 0.51785 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -11.95 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 670106 53 - 24543557 UCAACAUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCAUUUGGCUGCCU ..........(((.((((..((((((..........))))))..)))).))). ( -21.70, z-score = -2.95, R) >droSec1.super_2 690355 53 - 7591821 UCAACGUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCGUUUGGCUGCCU ..........(((........(((((..(((((....)))))..)))))))). ( -22.50, z-score = -2.81, R) >droSim1.chr3L 319469 53 - 22553184 UCAACAUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCAUUUGGCUGCCU ..........(((.((((..((((((..........))))))..)))).))). ( -21.70, z-score = -2.95, R) >droMoj3.scaffold_6680 6377803 51 - 24764193 UCGAAGUAUUUGGCUUUAUCUGGUUGUCUA--UAACUCGUAUCUUUGCUGCCA ..........((((.......(((((....--))))).(((....))).)))) ( -6.30, z-score = 0.08, R) >consensus UCAACAUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCAUUUGGCUGCCU ..........(((.((((..((((((..........))))))..)))).))). (-11.95 = -12.83 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:49 2011