| Sequence ID | dm3.chr3L |
|---|---|
| Location | 667,857 – 667,959 |
| Length | 102 |
| Max. P | 0.531606 |
| Location | 667,857 – 667,959 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.94 |
| Shannon entropy | 0.39083 |
| G+C content | 0.40353 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -14.36 |
| Energy contribution | -14.03 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 667857 102 - 24543557 ----UUGGGCC-AACCCGAAAUAACGUUAUUUAUUUCCCCAAUUUCAACUCAUCAAUUUCUGCCAACAGAGUUACAUCUUCAUGUGGCAGAGGCAGUCGGACAAAUG------------- ----....(((-.....(((((((......))))))).....................(((((((...(((......)))....)))))))))).............------------- ( -21.50, z-score = -1.07, R) >droSim1.chr3L 317232 108 - 22553184 -----UAGGCC-AACCCGAAAUAACGUUAUUUAUUUCCCCAAUUUCAGCUCAUCAAUUUCUGCCAACAGAGUUACAUCUUCAUGUGGCAGAGGCAGCCGGACAAAUGAUGAGUA------ -----..((..-...))(((((((......)))))))..........((((((((...(((((((...(((......)))....)))))))((...)).......)))))))).------ ( -26.80, z-score = -2.21, R) >droSec1.super_2 688136 108 - 7591821 -----UGGGCC-AACCCGAAAUAACGUUAUUUAUUUCCCCAAUUUCAGCUCAUCAAUUUCUGCCAACAGAGUUACAUCUUCAUGUGGCAGAGGCAGCCGGACAAAUGAUGAGUA------ -----.(((..-..)))(((((((......)))))))..........((((((((...(((((((...(((......)))....)))))))((...)).......)))))))).------ ( -30.30, z-score = -2.55, R) >droYak2.chr3L 656156 115 - 24197627 -----UGGGCCAAACCCAAAAUAACGUUAUUUAUUUCCCCAAUUUCAGCUCAUCAAUUUCUGCCAACGGAGUUACAUCUUCAUGCGGCAGAUGCGAGCGGACAAAUGAUGAGUACGAGGA -----((((.....))))........................((((.((((((((.((((((((...((((......))))..(((.....)))).))))).)).))))))))..)))). ( -27.60, z-score = -0.73, R) >droEre2.scaffold_4784 676035 108 - 25762168 -----UGGGCC-AACCCAAAAUAAUGUUAUUUAUUUCCCCAAUUUCAGCUCAUCAAUUUCUGCCAACGGAGUUACAUCUUCAUGUGGCAGAGGCAACCGGACAAAUGAUGAGUA------ -----((((..-..))))((((((......))))))...........((((((((...(((((((..((((......))))...)))))))(....)........)))))))).------ ( -31.70, z-score = -2.83, R) >droAna3.scaffold_13337 11611217 97 - 23293914 UGAUUUCGAA--AAGCCAAAAUAACAUAAUUCAGUUUAAUAAUUUUCUUUGAUCAAUUUUUGUUCGAAAAGUUACAUCUUCAUG-GGCAAAAA-GAUGGGA------------------- (((((..(((--((........(((........)))......)))))...))))).((((((((((..(((......)))..))-))))))))-.......------------------- ( -14.54, z-score = 0.00, R) >consensus _____UGGGCC_AACCCAAAAUAACGUUAUUUAUUUCCCCAAUUUCAGCUCAUCAAUUUCUGCCAACAGAGUUACAUCUUCAUGUGGCAGAGGCAACCGGACAAAUGAUGAGUA______ .....(((((.......(((((((......)))))))..........)))))....(((((((((...(((......)))....)))))))))........................... (-14.36 = -14.03 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:46 2011