| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,064,617 – 4,064,700 |
| Length | 83 |
| Max. P | 0.801326 |
| Location | 4,064,617 – 4,064,700 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 63.19 |
| Shannon entropy | 0.61657 |
| G+C content | 0.49437 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -10.50 |
| Energy contribution | -11.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4064617 83 - 23011544 --AAUGGGUGAGGAAGUCUUCUCCAGGGGU--GAAAGGAUUUUCUCAUUACCGGGAAAUCAGAGCUUUCAUUGCGCCGCAUCCACGU---------------- --..((((((.(((.......))).(.(((--(((((((((((((.......))))))))....)))))))).)....))))))...---------------- ( -23.60, z-score = -0.28, R) >droEre2.scaffold_4929 4125224 72 - 26641161 --AGUGGGUGAGCAAGUCUUCUCCAAGGGU--GAAAAGAUUUUCUCAUUACCGGGGAAUCAGAGCUUCAGCCACGU--------------------------- --.((((.(((((.....((((((...(((--((..((.....))..))))))))))).....)).))).))))..--------------------------- ( -24.60, z-score = -2.34, R) >droYak2.chr2L 4084222 74 - 22324452 AGUGUGGGUGAGGAAGUCGUCUCCAAGGGU--GAAACGAUUUUCUCAUUACCGGGGAAUCAAAGCUUCAGCCACGU--------------------------- ...(((((((((((((((((.(((....).--)).)))))))))))))....((((........))))..))))..--------------------------- ( -24.70, z-score = -2.01, R) >droSec1.super_5 2166468 83 - 5866729 --AGUGGGUGAGGUAGUCUUCUCCAGGGGU--GAAAGGAUUUUCUCAUUACCGGGGAAUCAUAGCUUUCAUUGCGCCUCAGCCACGU---------------- --.((((.((((((....((((((...(((--((..((.....))..))))))))))).....((.......)))))))).))))..---------------- ( -31.50, z-score = -2.86, R) >droSim1.chr2L 4021150 83 - 22036055 --AGUGGGUGAGGAAGUCUUCGCCAGGGGU--GAAAGGAUUUUCUCAUUACCGGGGAAUCAGAGCUUUCAUUGCGCCUCAGCCACGU---------------- --.(((((((((((((((((((((...)))--))..))))))))))))....((((.......((.......)).))))..))))..---------------- ( -30.00, z-score = -1.72, R) >droWil1.scaffold_180703 2059234 100 - 3946847 ---AUGGUUAAAGAGAACAGUAACAGCAGCUGCAACAAAUUUUCUCAUUAGCAAAGAGUCAAGAUGGUACUGCUGGCGCGCUUCUGUUUGACACGUGCCACAC ---(((((((((.((((..((..((((((.(((.....((((((((.........)))..))))).)))))))))..))..)))).)))))).)))....... ( -26.70, z-score = -0.43, R) >consensus __AGUGGGUGAGGAAGUCUUCUCCAGGGGU__GAAAGGAUUUUCUCAUUACCGGGGAAUCAGAGCUUUAAUUGCGCC_CA_CCACGU________________ ....((((((((((((((((.((.........)).)))))))))))))..))).................................................. (-10.50 = -11.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:15 2011