| Sequence ID | dm3.chr3L |
|---|---|
| Location | 649,936 – 650,049 |
| Length | 113 |
| Max. P | 0.627745 |
| Location | 649,936 – 650,049 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.60 |
| Shannon entropy | 0.56936 |
| G+C content | 0.35249 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -11.41 |
| Energy contribution | -13.25 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 649936 113 - 24543557 AAAUAGCUGUUGAUAGUGCUGAUUAGGUAAAAAAUUCCAC-CACAACAAAUACUGC----UCAAUCUAUUCAGUAAUCAGUGCGCGUAAGCACAAAGCUGUGUGCAUUUAUGGUUGAA ..((((((.(((...(..(((((..(((..........))-)........(((((.----..........))))))))))..)((....)).)))))))))................. ( -24.80, z-score = -0.25, R) >droSec1.super_2 670296 114 - 7591821 AAAUAGCUG-UGAUAGUGCUGAUUAGGUA--AAAUUCCAC-CAUAACAAAUAUUGCUCAAUCAAUCUAUUCAGUAAUCAGUGCGCGUAAGCACAAAGCUGUGUGCACUUAUGGUUGAA .....((((-.(((((...(((((..(((--(.(((....-.......))).))))..)))))..)))))))))(((((((((((...(((.....)))..))))))...)))))... ( -27.60, z-score = -1.16, R) >droSim1.chr3L 298197 110 - 22553184 AAAUAGCUG-UGAUAGUGCUGAUUAGGUA--AAAUUCCAC-CACAACAAAUAUUAC----UCAAUCUAUUCAGUAAUCAGUGCGCGUAAGCACAAAGCUGUGUGCACUUAUGGUUGAA ...((((((-(((...((((((.(((((.--.........-...............----...))))).))))))....((((((...(((.....)))..))))))))))))))).. ( -26.89, z-score = -1.26, R) >droYak2.chr3L 638021 111 - 24197627 AAAUAGCUG-UGAUAGUGCUGAUUAGGUA--GAAUUCAGUAGAAAACAAAUAUUGC----UUAUACUACUCAGUAAUCAGUACGCGUAAGCACAAAGCUAUGACCAUUUAGAGUUGAA ..((((((.-((...((((((((((((((--(.((.(((((.........))))).----..)).)))))...))))))))))((....)).)).))))))................. ( -30.30, z-score = -2.88, R) >droEre2.scaffold_4784 656405 107 - 25762168 AAAUAGCUG-UGAUAGUGCUGAUUAGGAA--AAAUUCCAC----AAAAAACAUUGC----UCAUCCUAUUCAGUAAUCAGUAGGCGUAAGCGCAGAGCUAUGAGCAUUUGGAGUUGAA ...(((((.-(((..(((((.....(((.--....)))..----......(((.((----((...(((((.(....).)))))(((....))).)))).))))))))))).))))).. ( -27.00, z-score = -1.39, R) >droGri2.scaffold_15110 19806996 94 + 24565398 ------------GGAAUG-UGACUAAUUU--CAAUUUAAUUUGCCUCGGAGAUAAC----UUCAAAUCUUCAAUUGUUUUU-----UAAGAAAACGUUUUUAAUUAACUAGUCCCUAA ------------......-.(((((....--................((((((...----.....))))))....(((..(-----((((((....)))))))..))))))))..... ( -14.00, z-score = -0.79, R) >consensus AAAUAGCUG_UGAUAGUGCUGAUUAGGUA__AAAUUCCAC_CACAACAAAUAUUGC____UCAAUCUAUUCAGUAAUCAGUGCGCGUAAGCACAAAGCUGUGAGCAUUUAGGGUUGAA ..((((((..(((...((((((.(((((...................................))))).)))))).)))....((....))....))))))................. (-11.41 = -13.25 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:42 2011