| Sequence ID | dm3.chr3L |
|---|---|
| Location | 648,430 – 648,543 |
| Length | 113 |
| Max. P | 0.767974 |
| Location | 648,430 – 648,543 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.54614 |
| G+C content | 0.53593 |
| Mean single sequence MFE | -39.03 |
| Consensus MFE | -20.15 |
| Energy contribution | -21.35 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 648430 113 + 24543557 AUCCCACUGUGCCAGGUAGCUGAAAAAUCGGCGAAUAUG-GCAGCGUCGAACGAGCCAUGUCG-CGUGGCAACGCUACCACUUUGUUUACUUUUAUUCGGAGAGCGAAGUGAAGA .........(((((.((.(((((....)))))((.((((-((..((.....)).)))))))))-).))))).......((((((((((.((.......)).)))))))))).... ( -37.20, z-score = -1.54, R) >droEre2.scaffold_4784 654892 112 + 25762168 -GACCCGCCGGCCAGACAGCUUUAAAGUCGGCGGAUGUG-GCAGCGCCGAACGAGCCACAUCG-CGUGGCAACGCCACGACUUUGUUUACUUUUAUUCGGAGAGCGCAGUAAAGA -....(((((((..............)))))))((((((-((..((.....)).)))))))).-((((((...))))))(((.(((((.((.......)).))))).)))..... ( -38.54, z-score = -1.09, R) >droYak2.chr3L 636494 106 + 24197627 -------CGGGCCAGACCGCUGAAAAGUCGGCGGAUGUG-GCAGCGCCGCACGAGCCACGUCG-CGUGGCAACGCCACGACUUUGUUUACUUUUAUUCGGAGAGCGCAGUGAAGA -------...((((.((((((((....))))))).).))-)).((((.(((((.....))).)-)(((((...)))))..(((((..((....))..))))).))))........ ( -40.00, z-score = -0.59, R) >droSim1.chr3L 296673 113 + 22553184 AAUCUGCCGGGCCAGAAGGCAGAAAAGUCGGUGGAUGUG-GCAGCGCCGAACGAGCCACGUCU-CGUGGCAACGCUGCCACUUUGUUUACUUUUAUUCGGAGAGCGAAGUGAAGA ..(((.(((((((....)))..((((((..(..((.(((-((((((.(....).((((((...-))))))..)))))))))))..)..))))))..)))))))............ ( -44.80, z-score = -2.24, R) >droSec1.super_2 668780 113 + 7591821 UAUCUGCCGGGCCAGAAAGCAGAAAAGUCGGCGGAUGUG-GCAGCGCCGAACGAGCCACGUCG-CGUGGCAACGCUACCACUUUGUUUACUUUUAUUCGGAGAGCGAAGUGAAGA .(((((((((((......)).......)))))))))(((-((..((.....)).((((((...-))))))...)))))((((((((((.((.......)).)))))))))).... ( -38.61, z-score = -0.77, R) >droVir3.scaffold_13049 16245332 114 - 25233164 AUCGCACUGUGGCAGCAUAUCGAUAAGUUAUCGAUAAUGUGGAGUGCUGGUGUGGCAACGCCAACGUCAUAAUUGUUUACUUUUUGCUGAUAAUAG-CAGAGAGCGGUCUUCUGA (((((..((((((.(((((((((((...))))))).)))).....(.((((((....)))))).))))))).........(((((((((....)))-)))))))))))....... ( -35.00, z-score = -1.28, R) >consensus AACCCACCGGGCCAGAAAGCUGAAAAGUCGGCGGAUGUG_GCAGCGCCGAACGAGCCACGUCG_CGUGGCAACGCUACCACUUUGUUUACUUUUAUUCGGAGAGCGAAGUGAAGA .........(((...............((((((...........))))))....((((((....))))))...)))..((((((((((.((.......)).)))))))))).... (-20.15 = -21.35 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:41 2011