| Sequence ID | dm3.chr3L |
|---|---|
| Location | 642,204 – 642,298 |
| Length | 94 |
| Max. P | 0.995065 |
| Location | 642,204 – 642,298 |
|---|---|
| Length | 94 |
| Sequences | 13 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 94.35 |
| Shannon entropy | 0.13039 |
| G+C content | 0.33562 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -20.87 |
| Energy contribution | -20.75 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.61 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.995065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 642204 94 + 24543557 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droSim1.chr3L 290546 94 + 22553184 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droSec1.super_2 662653 94 + 7591821 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droYak2.chr3L 629650 94 + 24197627 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droEre2.scaffold_4784 648340 94 + 25762168 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droAna3.scaffold_13337 16773237 94 - 23293914 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUU-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.89, R) >dp4.chrXR_group8 4608928 94 - 9212921 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUU-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.89, R) >droPer1.super_29 254419 94 - 1099123 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUU-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.89, R) >droWil1.scaffold_180698 10172117 94 + 11422946 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((.....-----..)).))).))))))..)))))))))).))))))-)))......-.... ( -26.10, z-score = -3.38, R) >droVir3.scaffold_13049 5805317 94 + 25233164 CUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUAUUUC-----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.(((((((...-----)))).))).))))))..)))))))))).))))))-)))......-.... ( -27.40, z-score = -3.93, R) >droMoj3.scaffold_6680 4143307 96 + 24764193 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUUU----AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUAACCAC .....(((((...((((.((((((((((..(-(((((.(((((......----..)).))).))))))..)))))))))).))))))-)))........... ( -26.40, z-score = -3.89, R) >droGri2.scaffold_15110 11300094 94 - 24565398 AUGAUUUGACUACGAAACCGGUUUUCGAUUU-GGUUUGACUGUUUUUC-----AGACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU-CAAUGAAUA-CCAC .....(((((...((((.((((((((((..(-(((((.((((((....-----.))).))).))))))..)))))))))).))))))-)))......-.... ( -27.50, z-score = -3.58, R) >anoGam1.chr2R 33274506 98 + 62725911 ---AUGUAAUCACAGAACCGGUUUUCAUUUUCGAUCUGACUUAUUUUUUUCACAAACAAGUGAGAUCACUUUGAAAGCUGAUUUUGUACAAUUAAUU-CAAC ---........((((((.(((((((((.....(((((.((((.(((.......))).)))).)))))....))))))))).))))))..........-.... ( -24.40, z-score = -3.65, R) >consensus AUGAUUUGACUACGAAACCGGUUUUCGAUUU_GGUUUGACUGUUUUUC_____AUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGU_CAAUGAAUA_CCAC .....(((...((((((.((((((((((..(.(((((.(((.................))).))))))..)))))))))).)))))).)))........... (-20.87 = -20.75 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:40 2011