Locus 5714

Sequence ID dm3.chr3L
Location 636,189 – 636,283
Length 94
Max. P 0.657876
window7847

overview

Window 7

Location 636,189 – 636,283
Length 94
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 94.50
Shannon entropy 0.08924
G+C content 0.57362
Mean single sequence MFE -33.70
Consensus MFE -33.62
Energy contribution -33.50
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -0.84
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.36
SVM RNA-class probability 0.657876
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 636189 94 + 24543557
UCAACUGGAAUUUGGGUCGGGUGGCGUGGCAAGAUGCAAGCGGCAAGACGCUCGAAUGCGCUUUCUUCCACAGCCACAGCCACAUCCACUGCCA------
.....((((...(((((...(((((((((.((((((((..((((.....)).))..))))...)))))))).))))).))).))))))......------ ( -33.20, z-score =  -0.96, R)
>droSim1.chr3L 284462 100 + 22553184
UCAACUGGAAUUUGGGUCGGGUGGCGUGGCAAGAUGCAAGCGGCAAGACGCUCGAAUGCGCUUUCUUCCACAGCCACAGCCACAUCCACAUCCACUGCCA
.....((((...(((((.(((((((((((.((((((((..((((.....)).))..))))...)))))))).)))))..))..)))))..))))...... ( -34.40, z-score =  -1.12, R)
>droSec1.super_2 656427 100 + 7591821
UCAACUGGAAUUUGGGUCGGGUGGCGUGGCAAGAUGCAAGCGGCAAGACGCUCGAAUGCGCUUUCUUCCACAGCCAUAGCCACAUCCACAUCCACUGCCA
.....((((...(((((.(((((((((((.((((((((..((((.....)).))..))))...)))))))).)))))..))..)))))..))))...... ( -33.10, z-score =  -0.81, R)
>droEre2.scaffold_4784 642409 100 + 25762168
UCAACUGGAAUUUGGGUCGGGUGGCGUGGCAAGAUGCAAGCGGCAAGACGCUCGACUGCGCUUUCUUCCACAGCCGCAGCCACAUCCACAUCCACUGCCA
.....((((...(((((.(((((((((((.((((((((..((((.....)).))..))))...)))))))).)))))..))..)))))..))))...... ( -34.10, z-score =  -0.47, R)
>consensus
UCAACUGGAAUUUGGGUCGGGUGGCGUGGCAAGAUGCAAGCGGCAAGACGCUCGAAUGCGCUUUCUUCCACAGCCACAGCCACAUCCACAUCCACUGCCA
.....((((...(((((.(((((((((((.((((((((..((((.....)).))..))))...)))))))).)))))..))..)))))..))))...... (-33.62 = -33.50 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:39 2011