| Sequence ID | dm3.chr3L |
|---|---|
| Location | 625,742 – 625,838 |
| Length | 96 |
| Max. P | 0.800994 |
| Location | 625,742 – 625,838 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.63 |
| Shannon entropy | 0.30496 |
| G+C content | 0.37538 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -15.94 |
| Energy contribution | -18.00 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 625742 96 + 24543557 ACUGGCGCCAUUUUGUUGGCGUCUAUCAUAUCAUCA-----CCAUGUAUAUAU-UAUUUGG-UGUA-UAUAUGUAUACAAUGCAAACGCAUAUUUACACAUCCG ...(((((((......)))))))((((((((...((-----(((.(((.....-))).)))-))..-.))))).)))..((((....))))............. ( -26.00, z-score = -2.75, R) >droSim1.chr3L 274032 94 + 22553184 ACUGGCGCCAUUUUGUUGGCGUCUAUCAUAUCA--------CCAUGUAUGUAUAUAUUUGG-UGUA-UAUACAUAUACAAUGCAGACGCAUAUUUACACAUCCG ...(((((((......)))))))..........--------...(((((((((((((....-.)))-))))))))))..((((....))))............. ( -27.20, z-score = -2.61, R) >droSec1.super_2 646027 83 + 7591821 ACUGGCGCCAUUUUGUUGGCGUC-AUCAUAUCC--------CCAUGUAUAUAU----UUGG-UGUA-U------AUACAAUGCAGACGCAUAUUUACACAUCCG ..((((((((......)))))))-)........--------...(((((((((----....-.)))-)------)))))((((....))))............. ( -23.80, z-score = -2.45, R) >droYak2.chr3L 611561 104 + 24197627 ACUGGCGCCAUUUUGUUGGCAUCUAUCAUAUCACUAUAUAUACUCGUAUGUGCAUAUAUGGAUAUGGUAUAUAUAUACAAUGCAGACGCAUAUUCACACAUCGG .((((.((((......))))...(((((((((..(((((.(((......))).)))))..)))))))))..........((((....)))).........)))) ( -23.90, z-score = -0.58, R) >consensus ACUGGCGCCAUUUUGUUGGCGUCUAUCAUAUCA________CCAUGUAUAUAU_UAUUUGG_UGUA_UAUAUAUAUACAAUGCAGACGCAUAUUUACACAUCCG ...(((((((......)))))))......................(((((((((((...........))))))))))).((((....))))............. (-15.94 = -18.00 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:38 2011