| Sequence ID | dm3.chr3L |
|---|---|
| Location | 621,149 – 621,258 |
| Length | 109 |
| Max. P | 0.950762 |
| Location | 621,149 – 621,258 |
|---|---|
| Length | 109 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.03 |
| Shannon entropy | 0.31964 |
| G+C content | 0.36161 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -18.40 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 621149 109 - 24543557 CAGCACACGCACCCAGA----------AUGCAGACGAAGCCGAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU ..((....))....(((----------(.((((((((((......(((((((((((....(((......)))....)))))))))))..(....)...)))))-))..)))....)))). ( -24.10, z-score = -1.48, R) >droSim1.chr3L 269181 120 - 22553184 CAGCACACGCACCCAGAAUGCAUGUGUAUGCAGACGAAGCCGAUACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUGUUUUUUGUUAUUUUCUU ..(((.(((((..(.....)..))))).)))((((((((......(((((((((((....(((......)))....)))))))))))..(....)...)))))))).............. ( -29.10, z-score = -2.07, R) >droYak2.chr3L 606848 119 - 24197627 CAGCACACGCACCCAGAAUGCAUGUGUAUGCAGACGAAGCCAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU ..(((.(((((..(.....)..))))).))).(((((((.((((.(((((((((((....(((......)))....)))))))))))..(....)....))))-.)))))))........ ( -29.60, z-score = -2.13, R) >droEre2.scaffold_4784 626962 119 - 25762168 CAGCACACGCACCCAGAAUGCAUGUGUAUGCAGACGAAGCCAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU ..(((.(((((..(.....)..))))).))).(((((((.((((.(((((((((((....(((......)))....)))))))))))..(....)....))))-.)))))))........ ( -29.60, z-score = -2.13, R) >droAna3.scaffold_13337 16750724 118 + 23293914 -UAGGCACGCACCGAAAGUGCAUAUGUAUGCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU -..((......))((((((((((....)))).((((((((((((.(((((((((((....(((......)))....)))))))))))..(....)...)))))-.))))))))))))).. ( -32.10, z-score = -2.96, R) >dp4.chrXR_group8 4584395 118 + 9212921 -UGGACACAUUGAGAGAGUGCAUAUGUAUGCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU -..........((((((((((((....)))).((((((((((((.(((((((((((....(((......)))....)))))))))))..(....)...)))))-.))))))))))))))) ( -32.90, z-score = -3.32, R) >droPer1.super_29 229659 118 + 1099123 -UGGACACAUUGAGAGAGUGCAUAUGUAUGCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU -..........((((((((((((....)))).((((((((((((.(((((((((((....(((......)))....)))))))))))..(....)...)))))-.))))))))))))))) ( -32.90, z-score = -3.32, R) >droWil1.scaffold_180698 10149641 113 - 11422946 ---CACACACACACAUU---CAACUAUAUGCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU ---..............---............((((((((((((.(((((((((((....(((......)))....)))))))))))..(....)...)))))-.)))))))........ ( -24.50, z-score = -2.32, R) >droVir3.scaffold_13049 5778459 98 - 25233164 --------------------CGGAGGCACA-AGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAAUUUUG-UUUUUGUUAUUUUCUU --------------------....((((.(-((((((((......(((((((((((....(((......)))....)))))))))))..(....)...)))))-))))))))........ ( -22.20, z-score = -1.41, R) >droMoj3.scaffold_6680 4112043 93 - 24764193 --------------------------CAAUCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG-UUUUUGUUAUUUUCUU --------------------------......((((((((((((.(((((((((((....(((......)))....)))))))))))..(....)...)))))-.)))))))........ ( -24.50, z-score = -2.94, R) >consensus _AGCACACGCACCCAGA_UGCAUAUGUAUGCAGACGAAGCAAAGACCUCUUUUUAAUGUAUUGCAAUUCCAAGAAUUUAGGAAGAGGAACGUGAGAAACUUUG_UUUUUGUUAUUUUCUU ................................(((((((......(((((((((((....(((......)))....)))))))))))..(....)..........)))))))........ (-18.40 = -18.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:37 2011