| Sequence ID | dm3.chr3L |
|---|---|
| Location | 620,757 – 620,860 |
| Length | 103 |
| Max. P | 0.585341 |
| Location | 620,757 – 620,860 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Shannon entropy | 0.41510 |
| G+C content | 0.32239 |
| Mean single sequence MFE | -14.52 |
| Consensus MFE | -7.58 |
| Energy contribution | -8.08 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 620757 103 - 24543557 -ACUUUCCGGUU---UUGUGAGAAAAUCUCUUAAAAAUAGAUUCACCUAACCCAAAAAUGCAUUUUUCACACAUUGCAAUCGAAAUU-----ACGAUUACGUACACAAACGG -.....(((((.---.((((.(((((...........(((......)))..............))))).))))..))(((((.....-----.)))))...........))) ( -14.31, z-score = -0.95, R) >droAna3.scaffold_13337 16750171 110 + 23293914 AAUACUUCAUUUAAACUAUUCAAAAACCUAUU-ACAAUAUUUUAAAAGGAUAC-AAAACUUUUCAUUCACGUAUUAUGCAGAAAAGCUCAAAAGCAUUGCCUACAUCUAGGG ..........................((((..-..........(((((.....-....))))).......(((....((((....(((....))).)))).)))...)))). ( -8.40, z-score = 0.36, R) >droEre2.scaffold_4784 626611 96 - 25762168 -ACUUUCCGGUU---UUUUGAGAAUAUCUAUUAAAAAUAGAUUCACCUAACCC-AAAAUGCAUUUUUCACACAUUGCAAUCGGA-----------AUUACGUACACAAACGG -...((((((((---...(((....((((((.....)))))))))...)))).-....((((............))))...)))-----------)...(((......))). ( -15.80, z-score = -2.23, R) >droYak2.chr3L 606508 97 - 24197627 -ACUUUCCGGUU---UUUUGAGAAAAUCUAUUAAAAAUAGAUUCACCUAACCCAAAAAUGCAUUUUUCACACAUUGCAAUCGGA-----------AUUACGUACACAAACGG -...((((((((---(((((((..(((((((.....)))))))...))....))))))((((............))))))))))-----------)...(((......))). ( -16.20, z-score = -2.28, R) >droSec1.super_2 640871 97 - 7591821 -ACUUUCCGGCU---UUUUGAGAAAAUCUAUUAAAAAUAGAUUCACCUAAACCAAAAAUGCAUUUUUCACACAUUGCAAUCGGA-----------AUUACGUACACAAACGG -...((((((.(---(((((((..(((((((.....)))))))...))....))))))((((............)))).)))))-----------)...(((......))). ( -15.10, z-score = -2.29, R) >droSim1.chr3L 268836 97 - 22553184 -ACUUUCCGGUU---UUUUGAGAAAAUCUAUUAAAAAUAGAUUCACCUAAACCAAAAAUGCAUUUUUCACACAUUGCAAUCGGA-----------AUUACGUACACAAACGG -...((((((((---(..(((....((((((.....)))))))))...))))).....((((............))))...)))-----------)...(((......))). ( -17.30, z-score = -2.80, R) >consensus _ACUUUCCGGUU___UUUUGAGAAAAUCUAUUAAAAAUAGAUUCACCUAACCCAAAAAUGCAUUUUUCACACAUUGCAAUCGGA___________AUUACGUACACAAACGG .....((((((.............(((((((.....)))))))...............((((............))))))))))...............(((......))). ( -7.58 = -8.08 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:36 2011