| Sequence ID | dm3.chr3L |
|---|---|
| Location | 620,530 – 620,625 |
| Length | 95 |
| Max. P | 0.974347 |
| Location | 620,530 – 620,625 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 92.57 |
| Shannon entropy | 0.10203 |
| G+C content | 0.31505 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -17.83 |
| Energy contribution | -17.17 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 620530 95 + 24543557 AAAAGAUGGCGACUUAAAAUUGAAAUACUCGUGUUAGGCCAAUAGAAAAGUUACCUUGACAUGAU--AUCAUAUG--AUAAUGAUGCCAAACUAUAUGU ......((((..................((((((((((..(((......)))..)))))))))).--(((((...--...))))))))).......... ( -18.90, z-score = -2.40, R) >droSec1.super_2 640641 98 + 7591821 AAAAGAUGGCGAUUUAAAAUUGAAAUACUCAUGUCAGGCCAAUAGAAAAGUUACCUUGACAUGAUACAUGAUAUG-UAUGAUAAUGCCAAACUAUAUGU ......(((((.................((((((((((..(((......)))..))))))))))(((((...)))-))......))))).......... ( -20.50, z-score = -2.43, R) >droSim1.chr3L 268605 99 + 22553184 AAAAGAUGGCGACCUAAAAUUGAAAUACUCAUGUCAGGCCAAUAGAAAAGUUACCUUGACAUGAUACAUGAUAUGAUAUGAUAAUGCCAAACUAUAUGU ......(((((.................((((((((((..(((......)))..))))))))))..((((......))))....))))).......... ( -19.80, z-score = -2.64, R) >consensus AAAAGAUGGCGACUUAAAAUUGAAAUACUCAUGUCAGGCCAAUAGAAAAGUUACCUUGACAUGAUACAUGAUAUG_UAUGAUAAUGCCAAACUAUAUGU ......(((((.................((((((((((..(((......)))..)))))))))).......(((......))).))))).......... (-17.83 = -17.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:35 2011