| Sequence ID | dm3.chr3L |
|---|---|
| Location | 602,759 – 602,862 |
| Length | 103 |
| Max. P | 0.851830 |
| Location | 602,759 – 602,862 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 69.80 |
| Shannon entropy | 0.52836 |
| G+C content | 0.45209 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -13.11 |
| Energy contribution | -14.64 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 602759 103 - 24543557 --GAACUGCGGCAAA-GAGCGGCUGGCAA-AGCAGAAUCAACUGCAACAUAUUCAGUAUACGGUAUACGUAUUCCCUGGCCAGAGAUGUAGUUUCGGAAAUAAUGAG --((((((((((...-..))..(((((..-.((((......))))........(((.(((((.....)))))...))))))))...))))))))............. ( -29.20, z-score = -1.98, R) >droSim1.chr3L 252435 100 - 22553184 --GAACUGCGGC-AA-GAGCAGCUGCCAA-AGCAGAAUCAACUGCAACAUAUUCAGUAUACGGUAUACGUAUUCUCUGGCCAUAGCUGUAGUCGCGGAAAUAAUG-- --...(((((((-..-..((((((((((.-.((((......)))).........((.(((((.....))))).)).))))...)))))).)))))))........-- ( -33.90, z-score = -3.30, R) >droSec1.super_2 622838 100 - 7591821 --GAACUGCGGC-AA-GAGCAGCUGCCGA-AGCAGAAUGAACUGCAACAUAUUCAGUAUACGGUAUAUGUAUUCUCUGUCCAUAGCUGUAGUCGCGGAAAUAAUG-- --...(((((((-..-..(((((((..((-.((((......))))........(((.(((((.....)))))...)))))..))))))).)))))))........-- ( -29.80, z-score = -1.76, R) >droEre2.scaffold_4784 605213 90 - 25762168 --AAACUGCGGC-AA-GAGCAGCUGCCAA-AGCAGAAUCAACUGCAACAUAUUCUGUAUAC-------GUAUUCUCUAGCCAGAGCUGUAGUCAAGGAAAUA----- --..((((((((-..-..((((((((...-.))))......)))).......((((..((.-------(......)))..))))))))))))..........----- ( -22.10, z-score = -0.65, R) >droAna3.scaffold_13337 21195729 102 + 23293914 ACACUCGGAGAAUAACAAACAGCUGGCUACAGAGGCAACAACUGCAACUGAAACGACA-ACA----AGUUGUUCUGGCCAUGUGGCUGCUAUUUGGCUAAAAGUCAG ..(((...((.....((((.(((.(((((((..(((.......((((((.........-...----))))))....))).)))))))))).)))).))...)))... ( -26.80, z-score = -1.07, R) >consensus __GAACUGCGGC_AA_GAGCAGCUGCCAA_AGCAGAAUCAACUGCAACAUAUUCAGUAUACGGUAUACGUAUUCUCUGGCCAUAGCUGUAGUCGCGGAAAUAAUG__ .....(((((((......((((((.......((((......))))............(((((.....)))))...........)))))).))))))).......... (-13.11 = -14.64 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:32 2011