| Sequence ID | dm3.chr3L |
|---|---|
| Location | 568,584 – 568,636 |
| Length | 52 |
| Max. P | 0.576275 |
| Location | 568,584 – 568,636 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 97.44 |
| Shannon entropy | 0.03532 |
| G+C content | 0.58333 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -11.25 |
| Energy contribution | -11.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.68 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 568584 52 + 24543557 CCUUCUACUAGGAAGCCCAGUAAACCAGCCGCAGCCGUUCCUUUCCUGGUGU .....((((((((((.......(((..((....)).)))..)))))))))). ( -9.20, z-score = 0.21, R) >droSec1.super_2 588847 52 + 7591821 CCUUCUACCAGGAAGCCCAGUCAACCAGCCGCAGCCGUUCCUUUCCUGGUGU .....(((((((((....((..(((..((....)).))).))))))))))). ( -12.00, z-score = -1.13, R) >droSim1.chr2R 8807621 52 + 19596830 CCUUCUACCAGGAAGCCCAGUCAACCAGCCGCAGCCGUUCCUUUCCUGGUGU .....(((((((((....((..(((..((....)).))).))))))))))). ( -12.00, z-score = -1.13, R) >consensus CCUUCUACCAGGAAGCCCAGUCAACCAGCCGCAGCCGUUCCUUUCCUGGUGU .....(((((((((....((..(((..((....)).))).))))))))))). (-11.25 = -11.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:27 2011