| Sequence ID | dm3.chr3L |
|---|---|
| Location | 568,154 – 568,260 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 568,154 – 568,260 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.83 |
| Shannon entropy | 0.29793 |
| G+C content | 0.59427 |
| Mean single sequence MFE | -32.46 |
| Consensus MFE | -19.17 |
| Energy contribution | -20.05 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 568154 106 + 24543557 -----UGCCAGGAGCAGAACUGGACCACGAGAGAGAGAGAGAGAGAGCAAUCGAACUUGUGGGCUGGCUGGGAGG---------ACCGAGGCGGCAGAGGAGACUUGGAAACUGGGCAAC -----((((.((............(((((((...((..(........)..))...)))))))((((.((.((...---------.)).)).)))).(((....))).....)).)))).. ( -33.60, z-score = -2.57, R) >droSim1.chr3L 230660 96 + 22553184 -----UGCCAGGAGCAGAACUGGUCCACGAGAGAGAG----------CAAUCGAACUGGUGGGCUGGCUGGGAGG---------AUAGAGGCGGCAGAGGAGGCUUGGAAACUGGGCAAC -----((((..((((....(((((((((.((...((.----------...))...)).))))))).((((.....---------.......))))..))...))))(....)..)))).. ( -31.20, z-score = -1.79, R) >droSec1.super_2 588424 96 + 7591821 -----UGCCAGGAGCAGAACUGGUCCACGAGAGAGAG----------CAUUCGAACUGGUGGGCUGGCUGGAAGG---------AUAGAGGCGGCUGAGGAGACUUGGAAACGGGGCAAC -----((((.....(((..(..((((((.((...(..----------....)...)).))))))..)))).....---------.......((.(..((....))..)...)).)))).. ( -32.60, z-score = -2.56, R) >droYak2.chr3L 550043 108 + 24197627 UGCCAGGACCGGAGCAGAACUGGUCCACGAGAGAG------------CUAUCAAAUUUGUGGGUUGGCUGGGAGGGGUGAGGAGACUGAGGAGGCAGAGGAGGCUUGGAAACUGGGCAAC ((((.(((((((.......)))))))......(((------------((.((...(((((......(((......))).((....))......))))).)))))))(....)..)))).. ( -31.10, z-score = -0.61, R) >droEre2.scaffold_4784 570438 94 + 25762168 -----UGCCAGGAGCCGAACUGGUCCACGAGAGAG------------CAAUCGAAUUUGUGGGCUGGCUGGGAGG---------GCCGAGGAGGCAGAAGAGACUUGGAAACUGGGCAAC -----((((....(((...(..(((((((((.((.------------...))...)))))))))..)((.((...---------.)).))..)))...........(....)..)))).. ( -33.80, z-score = -2.14, R) >consensus _____UGCCAGGAGCAGAACUGGUCCACGAGAGAGAG__________CAAUCGAACUUGUGGGCUGGCUGGGAGG_________ACAGAGGCGGCAGAGGAGACUUGGAAACUGGGCAAC ......(((.((..(((..(..(((((((((.((................))...)))))))))..))))...............(((((.............)))))...)).)))... (-19.17 = -20.05 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:27 2011