| Sequence ID | dm3.chr3L |
|---|---|
| Location | 565,249 – 565,353 |
| Length | 104 |
| Max. P | 0.746015 |
| Location | 565,249 – 565,353 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.55341 |
| G+C content | 0.49506 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -11.34 |
| Energy contribution | -12.59 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 565249 104 + 24543557 AAGCUGGAACAGCCAUAAAAGCAACGUCUCUAGCACGAAAGUGCGGCAACAUCAGGCAUACCUAUGUAUGGAAAACAAGCUGCAACAUCAGUGAAAACACUUGA ..((((((((.((.......))...)).))))))((....))(((((.((((.(((....))))))).((.....)).)))))....((((((....))).))) ( -25.80, z-score = -1.30, R) >droSec1.super_2 585671 104 + 7591821 AAGCAGCAAUAGCCAUAAAUGCAACGUCUCUAGCACGAAAGUGCGGCAACAUCAGGAACACCUAUGUAUGGAAAACAAGCUGCAACAUCAGUGAAAACACUUCA ..(((((.....(((((.(((....((..((.((((....))))(....)...))..))...))).))))).......)))))......((((....))))... ( -28.70, z-score = -2.95, R) >droSim1.chr3L 227811 104 + 22553184 AAGCAGCAAUAGCCAUAAAUGCAACGUCUCUAGCACGAAAGUGCGGCACCAUCAGGAACACCUAUGUAUGGAAAACAAGCUGCAACAUCAGUGAAAACACUUCA ..(((((....(((....(((...))).....((((....))))))).((((((((....))..)).)))).......)))))......((((....))))... ( -28.50, z-score = -2.75, R) >dp4.chr4_group3 2942515 89 - 11692001 -------------UGCUGGGCCAGCUACCCGGACAUCAGACUGGCGCA-CAGGAGGACGGCGAGAUGAUGCCAGUGGAGCCGCGAC-CCAGUCCAAGGACGCAG -------------(((((((((.(((.(((((.(((((...((.((..-(....)..)).))...))))))).).))))).).).)-)))(((....)))))). ( -30.70, z-score = -0.06, R) >consensus AAGCAGCAAUAGCCAUAAAUGCAACGUCUCUAGCACGAAAGUGCGGCAACAUCAGGAACACCUAUGUAUGGAAAACAAGCUGCAACAUCAGUGAAAACACUUCA ..(((((.....(((((...............((((....))))((..............))....))))).......))))).......(((....))).... (-11.34 = -12.59 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:26 2011