| Sequence ID | dm3.chr3L |
|---|---|
| Location | 562,931 – 563,034 |
| Length | 103 |
| Max. P | 0.713546 |
| Location | 562,931 – 563,034 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.70 |
| Shannon entropy | 0.42819 |
| G+C content | 0.55923 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -11.84 |
| Energy contribution | -11.65 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 562931 103 - 24543557 --------AGCAACAGAUACGAUGGCGGGUGGCGUUUACCUCCACCUCCACCCACUAUCCCACCCCCUUCUUC-UGCCACCCACUC-AAAAACCCGCCUCGUAACGAUCCACU --------.......(.(((((.(((((((((((.......................................-))))))))....-........)))))))).)........ ( -20.33, z-score = -1.89, R) >droYak2.chr3L 544589 95 - 24197627 --------AGCAACGGAUACGAUGGCGGGUGGCGUUUACCU------CCACCCACAAUGCCACCCCCUUUUCC----CGCCCACCCAAAAAACCCCCCGCGUAACGAUCCACU --------......((((.((..((.((((((((((.....------........))))))))))))......----(((..................)))...))))))... ( -25.89, z-score = -2.39, R) >droEre2.scaffold_4784 565147 93 - 25762168 --------AGCAACAGAUACGAUGGCGGGUGGCGUUUACCU------CCACCCACAAUCCCACCCCCUUUUUC----CACCCACCC-AAAAACCC-CCUCGUAACGAUCCACU --------.......(.(((((.((.((((((.(.....).------))))))..............(((((.----.........-)))))..)-).))))).)........ ( -16.30, z-score = -1.07, R) >droAna3.scaffold_13337 21149080 101 + 23293914 AAAAAAAAAGAAACAAAUUCAGUGGCGGGUGGCGUCCAC--------CCACUU-UUCUCCCGCCCCCUGCCCCAUGUAGCACACUCGAAACAACCUCC---UAACAAUCUGCU .................(((((((((((((((...))))--------))....-.......((.....))........)).)))).))).........---............ ( -19.00, z-score = -0.81, R) >consensus ________AGCAACAGAUACGAUGGCGGGUGGCGUUUACCU______CCACCCACAAUCCCACCCCCUUCUCC____CACCCACCC_AAAAACCC_CCUCGUAACGAUCCACU .......................((.((((((...........................)))))))).............................................. (-11.84 = -11.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:25 2011